View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15036_high_10 (Length: 388)
Name: NF15036_high_10
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 10322755 - 10322404
Alignment:
| Q |
13 |
attcttggtcggtgtaatttttgtcaaaacaaaaagtcggtgcattattctttttctacccatttttgacagtaaaagaatgaatgtctttagtnnnnnn |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10322755 |
attcttggtcggtgtaatttttgtcaaaacaaaaagtcggtgcattattctttttctacccatttttgacagtaaaagaatggatgtctttagtaaaaaa |
10322656 |
T |
|
| Q |
113 |
ntaaagggcatagatagatatgtggtcaattttttactcaaaaaataacataaccgtaaaagcttccgtttatgagaactaataacatttctttataata |
212 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
10322655 |
aaaaaaggcatagatagatatgtggtcaattttttactcaaaaaataacataaccgt------------ttatgagaactactaacatttctttataata |
10322568 |
T |
|
| Q |
213 |
aaacatgctcctaaatggtatcagctcaataaaagagaaagcaagaagaaaaagaagctagctt----taatccttctcaattccctgaatctctcttta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10322567 |
aaacatgctcctaaatggtatcagctcaataaaagagaaagcaagaagaaaaagaagctagctttaattaatccttctcaattccctgaatctctcttta |
10322468 |
T |
|
| Q |
309 |
attcacatgatctttcggttcacttatggagattatgtgcatggtatatattcctatttgtgat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10322467 |
attcacatgatctttcggttcacttatggagattatgtgcatggtatatattcctatttgtgat |
10322404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University