View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_high_12 (Length: 385)
Name: NF15036_high_12
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 218 - 347
Target Start/End: Original strand, 5756394 - 5756523
Alignment:
| Q |
218 |
agacagataaagcttcaatgttagatgaggccattgaatatttaaagcagcttcagcttcaagtgcaagtgagttttctttcacttaagatgaacaatca |
317 |
Q |
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| T |
5756394 |
agacagataaagcttcaatgttagatgaggccattgaatatttaaagcagcttcagcttcaagtgcaagtgagttttctttcacttaagatgaacaatca |
5756493 |
T |
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| Q |
318 |
aactttaaaatatgttaaatattatgaatg |
347 |
Q |
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| T |
5756494 |
aactttaaaacatgttaaatattatgaatg |
5756523 |
T |
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Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 5756191 - 5756288
Alignment:
| Q |
15 |
cagagaaggaggagtaagattaatgagaaattgaaagccttacaaaatttaattccaaattctaacaaggtgatgtatttttgttaattttctagcat |
112 |
Q |
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| T |
5756191 |
cagagaaggaggagtaagattaatgagaaattgaaagccttacaaaatttaattccaaattctaacaaggtgatgtatttttgttaattttctagcat |
5756288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 6074738 - 6074692
Alignment:
| Q |
300 |
acttaagatgaacaatcaaactttaaaatatgttaaatattatgaatg |
347 |
Q |
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| T |
6074738 |
acttaagatgaacaatcaaactctaaaacatg-taaatattatgaatg |
6074692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 6176803 - 6176877
Alignment:
| Q |
12 |
gagcagagaaggaggagtaagattaatgagaaattgaaagccttacaaaatttaattccaaattctaacaaggtg |
86 |
Q |
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| T |
6176803 |
gagcagagaagaaggagtaggatcaatgagaaaatgaaagctttacaaaatctaattccaaattctaacaaggtg |
6176877 |
T |
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