View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_high_26 (Length: 311)
Name: NF15036_high_26
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 1549321 - 1549040
Alignment:
| Q |
14 |
agacatttgatctgttggggcgcagattcgaacccgcaattgctacttaacttgtgtgattcttgtcacgctatttgacnnnnnnnnnnnnnnnnngagt |
113 |
Q |
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| T |
1549321 |
agacatttgatctgttggggcgcagattcgaacccgcaattgctacttaacttgtgtgattcttgtcacgctctttgacaaaaaagaaaagaaaaagagt |
1549222 |
T |
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| Q |
114 |
tagttatactaactagctaacttgtgtaactaattagtataactaactttatgaaaatagggtcttttcgttgatatttgtgattttttcaacatacttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1549221 |
tagttatactaactagctaacttgtgtaactaattagtataactaactttatgaaaatagggtcttttcgttgatatttgtgatttgttcaacatacttg |
1549122 |
T |
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| Q |
214 |
aggttttgtttgctttgacagagcgttcggatggaagttttgtgttcacatttggcaatgctagtgagattagagaaaagat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1549121 |
aggttttgtttgctttgacagagcgttcggatggaagttttgtgttcacatttggcaatgctagtgagattagagaaaagat |
1549040 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 30625152 - 30625116
Alignment:
| Q |
10 |
gcagagacatttgatctgttggggcgcagattcgaac |
46 |
Q |
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||||||||||||||| |||||| |||||||||||||| |
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| T |
30625152 |
gcagagacatttgatatgttggagcgcagattcgaac |
30625116 |
T |
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