View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_high_28 (Length: 304)
Name: NF15036_high_28
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_high_28 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 228897 - 228689
Alignment:
| Q |
20 |
cctaatgagtcctagagatctaagtcacctaaataaattttcatatagctttctaaacgttgcatgacatgcatttattaatgtcttcctaacacactat |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
228897 |
cctaatgagtcctagagatctatgtcacctaaataaattttcatatagctttctaaacgttgcatgacatgcatttattaatgtctccctaacacactat |
228798 |
T |
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| Q |
120 |
gcatatgctttaactatcttgaccaggaaaagatacgagttgctctttatgtacaaaaagcagcattgcattttataaacggtaatctacattcaatagc |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
228797 |
gcatatgctttaactatcttgaccaggagaagatacgagttgctctttatgtacaaaaagcagcattgcattttataaacggtaatctacattcaatagc |
228698 |
T |
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| Q |
220 |
tttcattca |
228 |
Q |
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||||||||| |
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| T |
228697 |
tttcattca |
228689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 14588481 - 14588689
Alignment:
| Q |
20 |
cctaatgagtcctagagatctaagtcacctaaataaattttcatatagctttctaaacgttgcatgacatgcatttattaatgtcttcctaacacactat |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14588481 |
cctaatgagtcctagagatctatgtcacctaaataaattttcatatagctttctaaacgttgcatgacatgcatttattaatgtctccctaacacactat |
14588580 |
T |
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| Q |
120 |
gcatatgctttaactatcttgaccaggaaaagatacgagttgctctttatgtacaaaaagcagcattgcattttataaacggtaatctacattcaatagc |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588581 |
gcatatgctttaactatcttgaccaggagaagatacgagttgctctttatgtacaaaaagcagcattgcattttataaacggtaatctacattcaatagc |
14588680 |
T |
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| Q |
220 |
tttcattca |
228 |
Q |
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||||||||| |
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| T |
14588681 |
tttcattca |
14588689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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