View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15036_high_3 (Length: 563)
Name: NF15036_high_3
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_high_3 |
 | |
|
| [»] scaffold0490 (1 HSPs) |
| | |
|
| [»] scaffold0309 (1 HSPs) |
| | |
|
| [»] scaffold0522 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Original strand, 43353703 - 43354230
Alignment:
| Q |
19 |
aaaatggagggtaaacccgttttccatttgaaaatttattgtttgataaatatttcagttcgaaattaaattatgaaaagtttaaatgttaatagnnnnn |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |
|
|
| T |
43353703 |
aaaatggagggtaaaccctttttccatctgaaaatttattgtttgataaatatttcagttcgaaattaaattatgaaaagtttcagcgttaattgaaaaa |
43353802 |
T |
|
| Q |
119 |
nnnncgggagtgtataaagtggctcctagcctccacctta----ctcaattggtaaaccattttggcatctgaaaatttattttttgataaatattttaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
43353803 |
aaa-cgggagtgtataaagtggctcctagcctccaccttacttactcaattggtaaaccattttggcatctgaaagtttgttttttgataaatattttaa |
43353901 |
T |
|
| Q |
215 |
tacgtcgagaatgtagttaaggaaactgttattcgaaccaaaagaaggaaaccagtaaaaatgagagagacataacatagtttaagagtagtttattgaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43353902 |
tacgtcgagaatgtagttaaggaaactgttattcgaaccaaaagaaggaaaccggtaaaaatgagagagacataatatagtttaagagtagtttattgaa |
43354001 |
T |
|
| Q |
315 |
tgacacgctcctaagaccatccataatggaacatctcattttaagtgtttaactgattctattgtaaacatagtttacaaagtttttgatcatcaatatt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43354002 |
tgacacgctcctaagaccatccataatggaacatctcattttaagtgtttaactaattctattgtaaacatagtttacaaagtttttgatcatcaaattt |
43354101 |
T |
|
| Q |
415 |
atttattttttactacattaatcatcaaatttaactaataaatcaaacgagtccattgattgtcgttcataattgtttgaaaatgtagtatgatagttat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43354102 |
atttattttttactacattaatcatcaaatttaactaataaatcaaacgagtccattgattgtcgttcataattgtttgaaaatgtagtatgatagttat |
43354201 |
T |
|
| Q |
515 |
tgannnnnnngtttggtgaattttgaata |
543 |
Q |
| |
|
||| || |||||||||||||||| |
|
|
| T |
43354202 |
tgatttttttgtgtggtgaattttgaata |
43354230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 436 - 508
Target Start/End: Original strand, 43355126 - 43355198
Alignment:
| Q |
436 |
tcatcaaatttaactaataaatcaaacgagtccattgattgtcgttcataattgtttgaaaatgtagtatgat |
508 |
Q |
| |
|
||||| |||||| ||||||||| |||| ||| ||||||||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
43355126 |
tcatcgaatttatctaataaataaaactagttcattgattgtcattcataattatttgaaaatatagtatgat |
43355198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 8751 - 8850
Alignment:
| Q |
273 |
aaatgagagagacataacatagtttaagagtagtttattgaatgacacgctcctaagaccatccataatggaacatctcattttaagtgtttaactgatt |
372 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||||||||| || | ||||||||||||||| | |||||| ||||| ||||||| ||||||| ||||| |
|
|
| T |
8751 |
aaatgatagaggcataacatagttcaagagtagtttattgaaggaaaagctcctaagaccatcgagaatggagcatctaattttaaatgtttaaatgatt |
8850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 2093 - 2194
Alignment:
| Q |
273 |
aaatgagagagacataacatagtttaagagtagtttattgaatgacacgctcctaagaccatccataatggaacatctcattttaagtgtttaactgatt |
372 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||||||||| || | | |||||| | |||||| |||||| ||||| ||||||| ||||||| ||||| |
|
|
| T |
2093 |
aaatgatagaggcataacatagttcaagagtagtttattgaacgaaaagttcctaaaaacatccaaaatggagcatctaattttaaatgtttaaatgatt |
2192 |
T |
|
| Q |
373 |
ct |
374 |
Q |
| |
|
|| |
|
|
| T |
2193 |
ct |
2194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 2927 - 2872
Alignment:
| Q |
280 |
agagacataacatagtttaagagtagtttattgaatgacacgctcctaagaccatc |
335 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
2927 |
agaggcataacatagttcaagagtagtttattgaacgaaaagctcctaagaccatc |
2872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University