View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_high_39 (Length: 255)
Name: NF15036_high_39
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_high_39 |
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| [»] scaffold0303 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 18119596 - 18119358
Alignment:
| Q |
1 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18119596 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgc |
18119497 |
T |
|
| Q |
101 |
gggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatgactccgtaatatcctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18119496 |
gggctgcatatctgttcgcaaactgttagcaaactcccaatcatctagcataaatttagctctttcaatcacagctgcacatgactccgtaacatcctcc |
18119397 |
T |
|
| Q |
201 |
caaaactttaaattacggcgtttccataaactccataat |
239 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||| |
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| T |
18119396 |
caaacctttaaattacggtgtttccataaactccataat |
18119358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10770872 - 10770638
Alignment:
| Q |
1 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10770872 |
tctgttgcggttcagcagtagcagatgccgcaagaacaacagctaatctgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgc |
10770773 |
T |
|
| Q |
101 |
gggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatgactccgtaatatcctcc |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||| |
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| T |
10770772 |
gagctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttaactctttcaatcgcatctgcacatgactccgtaacatcctcc |
10770673 |
T |
|
| Q |
201 |
caaaactttaaattacggcgtttccataaactcca |
235 |
Q |
| |
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|||| | ||| |||| ||||||||||||||||||| |
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| T |
10770672 |
caaaccattatattagggcgtttccataaactcca |
10770638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28860445 - 28860207
Alignment:
| Q |
1 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28860445 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagttgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgt |
28860346 |
T |
|
| Q |
101 |
gggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatgactccgtaatatcctcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||| |
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| T |
28860345 |
gggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagatctttcaatcacagcggcacatgactctgtaacatcctcc |
28860246 |
T |
|
| Q |
201 |
caaaactttaaattacggcgtttccataaactccataat |
239 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||| |
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| T |
28860245 |
caaacctttaaattacggcgtttccatatactccataat |
28860207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13852 - 13614
Alignment:
| Q |
1 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
13852 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgatgtagaccgtgtggtgcaggttgagttgt |
13753 |
T |
|
| Q |
101 |
gggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatgactccgtaatatcctcc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |
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| T |
13752 |
gggctgcatatctgttcggaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcactgctgcacatgacttcgtaacatcctcc |
13653 |
T |
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| Q |
201 |
caaaactttaaattacggcgtttccataaactccataat |
239 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||| |
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| T |
13652 |
caaacctttaaattacagcgtttccataaactccataat |
13614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 22736950 - 22737182
Alignment:
| Q |
1 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgt |
100 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22736950 |
tctgttgcagttcagcagtagtagatgccgcaagaacagcaactgaactgttcacagcagcagcctgttgctgcagaccg----gtgcaggctgagttgc |
22737045 |
T |
|
| Q |
101 |
gggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatgactccgtaatatcctcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
22737046 |
gggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctg--catgactccgtaacatcctcc |
22737143 |
T |
|
| Q |
201 |
caaaactttaaattacggcgtttccataaactccataat |
239 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||| |
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| T |
22737144 |
caaacctttaaattacggtgtttccataaacttcataat |
22737182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 17752750 - 17752976
Alignment:
| Q |
1 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17752750 |
tctgttgcggttcagaagtagcagatgccacaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggct------- |
17752842 |
T |
|
| Q |
101 |
gggctgcatatctgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctgcacatgactccgtaatatcctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
17752843 |
-----gcatatctgttcgcaaactgttagcgaactcccaatcatccagcataactttagttctttcaatcacagctgcacatgactccgtaacatcctcc |
17752937 |
T |
|
| Q |
201 |
caaaactttaaattacggcgtttccataaactccataat |
239 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
17752938 |
caaacctttaaattacagcgtttccataaactccataat |
17752976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28942711 - 28942804
Alignment:
| Q |
1 |
tctgttgcggttcagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctg |
94 |
Q |
| |
|
|||| |||||||||||| || | ||||| ||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
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| T |
28942711 |
tctgatgcggttcagcaataactgatgctgcaggaacataagctgaactgtcatcagcagcaaactgttgcttcagaccgtgtggtgcaggctg |
28942804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 27492783 - 27492679
Alignment:
| Q |
134 |
ctcccaatcatctagcataactttagctctttcaatcacagctgcacatgactccgtaatatcctcccaaaactttaaattacggcgtttccataaactc |
233 |
Q |
| |
|
|||||||||||| |||| ||| | |||| ||||||||| | || |||| |||||| | ||||||||||| ||||||||||||| ||||||| ||| || |
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| T |
27492783 |
ctcccaatcatccagcaaaacccttgctcgctcaatcacaacagcccatgtctccgttacatcctcccaaacctttaaattacggtgtttccacaaaatc |
27492684 |
T |
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| Q |
234 |
cataa |
238 |
Q |
| |
|
||||| |
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|
| T |
27492683 |
cataa |
27492679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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