View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_high_4 (Length: 475)

Name: NF15036_high_4
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_high_4
NF15036_high_4
[»] scaffold0449 (1 HSPs)
scaffold0449 (1-456)||(1002-1457)
[»] chr5 (11 HSPs)
chr5 (373-456)||(42904668-42904751)
chr5 (280-328)||(20499747-20499795)
chr5 (280-370)||(32097524-32097608)
chr5 (280-369)||(12692783-12692866)
chr5 (280-336)||(30384886-30384942)
chr5 (280-371)||(32094724-32094809)
chr5 (280-330)||(12686681-12686731)
chr5 (280-330)||(41296886-41296936)
chr5 (287-330)||(30771890-30771933)
chr5 (280-330)||(28525888-28525938)
chr5 (280-330)||(28531984-28532034)
[»] chr8 (10 HSPs)
chr8 (280-371)||(5542664-5542748)
chr8 (280-369)||(36818546-36818629)
chr8 (280-371)||(32890460-32890545)
chr8 (280-371)||(32896584-32896669)
chr8 (280-330)||(42993502-42993552)
chr8 (280-330)||(39727787-39727837)
chr8 (280-330)||(39736041-39736091)
chr8 (280-315)||(1883340-1883375)
chr8 (280-330)||(14417568-14417618)
chr8 (280-330)||(22220230-22220280)
[»] chr3 (23 HSPs)
chr3 (280-371)||(10238715-10238800)
chr3 (280-371)||(11840228-11840313)
chr3 (280-370)||(55003904-55003988)
chr3 (280-369)||(26429920-26430003)
chr3 (280-369)||(10244837-10244920)
chr3 (280-371)||(42191723-42191808)
chr3 (280-369)||(11846480-11846562)
chr3 (280-330)||(8331394-8331444)
chr3 (280-330)||(9586515-9586565)
chr3 (280-369)||(17056294-17056377)
chr3 (280-330)||(42197665-42197715)
chr3 (280-330)||(10761153-10761203)
chr3 (280-330)||(10769472-10769522)
chr3 (280-330)||(23138919-23138969)
chr3 (280-330)||(30051603-30051653)
chr3 (280-330)||(38449566-38449616)
chr3 (280-330)||(38456053-38456103)
chr3 (281-330)||(28964487-28964536)
chr3 (280-331)||(34300044-34300095)
chr3 (280-330)||(49151219-49151269)
chr3 (280-330)||(49157286-49157336)
chr3 (280-322)||(53071754-53071796)
chr3 (290-331)||(8474648-8474689)
[»] chr2 (13 HSPs)
chr2 (280-336)||(23343164-23343220)
chr2 (280-369)||(36749988-36750071)
chr2 (280-371)||(13461612-13461697)
chr2 (280-371)||(35085182-35085267)
chr2 (280-370)||(13455672-13455756)
chr2 (280-330)||(23283850-23283900)
chr2 (280-330)||(31001983-31002033)
chr2 (280-330)||(13150192-13150242)
chr2 (280-330)||(30964934-30964984)
chr2 (280-330)||(35091155-35091205)
chr2 (280-330)||(28683447-28683497)
chr2 (280-330)||(44717308-44717358)
chr2 (281-330)||(19879201-19879250)
[»] chr1 (12 HSPs)
chr1 (280-371)||(25382038-25382123)
chr1 (280-369)||(1077818-1077901)
chr1 (280-369)||(50305771-50305854)
chr1 (280-371)||(12184099-12184184)
chr1 (280-330)||(25275549-25275599)
chr1 (280-330)||(44409607-44409657)
chr1 (280-330)||(31051151-31051201)
chr1 (280-330)||(31057651-31057701)
chr1 (280-330)||(25388005-25388055)
chr1 (302-371)||(33458431-33458494)
chr1 (281-330)||(34739593-34739642)
chr1 (280-336)||(27954762-27954818)
[»] chr6 (10 HSPs)
chr6 (280-369)||(25343201-25343284)
chr6 (280-371)||(21191373-21191457)
chr6 (280-330)||(4580824-4580874)
chr6 (280-330)||(21771067-21771117)
chr6 (280-330)||(25353820-25353870)
chr6 (280-371)||(17581176-17581261)
chr6 (280-330)||(8651306-8651356)
chr6 (280-330)||(30906083-30906133)
chr6 (280-370)||(21197544-21197627)
chr6 (280-336)||(21783828-21783884)
[»] chr4 (13 HSPs)
chr4 (281-369)||(24287561-24287643)
chr4 (280-371)||(17627277-17627362)
chr4 (280-330)||(6257707-6257757)
chr4 (280-330)||(10733852-10733902)
chr4 (280-330)||(10739839-10739889)
chr4 (280-330)||(10947621-10947671)
chr4 (280-330)||(10953608-10953658)
chr4 (280-330)||(26957306-26957356)
chr4 (280-330)||(48160566-48160616)
chr4 (280-330)||(48166785-48166835)
chr4 (280-330)||(26972057-26972107)
chr4 (280-314)||(50168218-50168252)
chr4 (335-375)||(35177365-35177405)
[»] scaffold0208 (2 HSPs)
scaffold0208 (280-369)||(6096-6179)
scaffold0208 (280-330)||(12002-12052)
[»] chr7 (10 HSPs)
chr7 (280-330)||(338988-339038)
chr7 (280-330)||(26383276-26383326)
chr7 (280-330)||(28421461-28421511)
chr7 (280-369)||(5979679-5979762)
chr7 (280-330)||(351394-351444)
chr7 (280-330)||(3811671-3811721)
chr7 (280-325)||(7608060-7608105)
chr7 (280-330)||(3817813-3817863)
chr7 (275-336)||(35148506-35148568)
chr7 (280-336)||(5849131-5849187)
[»] scaffold1114 (1 HSPs)
scaffold1114 (280-330)||(670-720)
[»] scaffold0064 (1 HSPs)
scaffold0064 (280-371)||(13845-13930)
[»] scaffold0363 (1 HSPs)
scaffold0363 (280-330)||(1101-1151)
[»] scaffold0012 (1 HSPs)
scaffold0012 (280-330)||(173392-173442)


Alignment Details
Target: scaffold0449 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 1002 - 1457
Alignment:
1 aaaaatatagataa-ttgatagaaattaaaactaaaaaatattttaactgtattgcgcatatataatgcttgaaacataaaaattagaaccaaatatttt 99  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1002 aaaaatatagataaattgatagaaattaaaactaaaaaatattttaactgtattgcgcatatataatgcttgaaacataaaaattagaaccaaatatttt 1101  T
100 ttatctttaatctttaatagtgattagtaattcaatttcccccctacttaattggataaattcaacaaataaaaactcagtattaagtttgttttaagaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1102 ttatctttaatctttaatagtgattagtaattcaatttcccc-ctacttaattggataaattcaacaaataaaaactcagtattaagtttgttttaagaa 1200  T
200 tcctaaaaaagtaactatactttctaattcaattcacacctcgcattattttttaaaataaaacaactcagatggtaatggataaatagctaatataatt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1201 tcctaaaaaagtaactatactttctaattcaattcacacctcgcattattttttaaaataaaacaactcagatggtaatggataaatagctaatataatt 1300  T
300 attattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaatatatggaaaagtgtttggatggcaaaga 399  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
1301 attattacgatatttgtccatataatgatatcagaatcataatattattaaataataaaattttccaacaatgtatggaaaagtgtttggatggcaaaga 1400  T
400 ttgtaacccaaagcgggttcaagtggagcgttagcattggagagaacatgtctatat 456  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
1401 ttgtaacccaaaacgggttcaagtggagcgttagcattggggagaacatgtctatat 1457  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 373 - 456
Target Start/End: Original strand, 42904668 - 42904751
Alignment:
373 tatggaaaagtgtttggatggcaaagattgtaacccaaagcgggttcaagtggagcgttagcattggagagaacatgtctatat 456  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||| ||||||||||||||||    
42904668 tatggagaagtgtttggatggcaaagattgtgacccaaagcaggttcaagtggagcgctaacattggggagaacatgtctatat 42904751  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 20499795 - 20499747
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgat 328  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
20499795 gataaatagctaatataattattattacgatatttgtccatataatgat 20499747  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 32097524 - 32097608
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaa 370  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| |||||||||    
32097524 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaacaa 32097608  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 12692783 - 12692866
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||    
12692783 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaaca 12692866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 30384886 - 30384942
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaat 336  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||    
30384886 gataaatagctaatataattattattacaatatttgtccacataatgatatcggaat 30384942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 32094724 - 32094809
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||| ||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||||    
32094724 gataaatagttaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaacaat 32094809  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 12686681 - 12686731
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
12686681 gataaatagctaatataattattattacgatatttgcccacataatgatat 12686731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 41296936 - 41296886
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
41296936 gataaatagctaatataattattattacgatatttgcccacataatgatat 41296886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 30771933 - 30771890
Alignment:
287 agctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||    
30771933 agctaatataattattattacgatatttgcccacataatgatat 30771890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 28525888 - 28525938
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||  ||| ||||||||||    
28525888 gataaatagctaatataattattgttacgatattttcccacataatgatat 28525938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 28531984 - 28532034
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||  ||| ||||||||||    
28531984 gataaatagctaatataattattgttacgatattttcccacataatgatat 28532034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 5542664 - 5542748
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    |||||||| |||||||||||||||||| |||||||| ||| ||||||||||       ||||||||||||||||||||||| ||||||||||    
5542664 gataaataactaatataattattattacgatatttgcccacataatgatat-------agaatattattaaataataaaatattccaacaat 5542748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 36818629 - 36818546
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||    
36818629 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaaca 36818546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 32890545 - 32890460
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||  ||||||||||    
32890545 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaacattccaacaat 32890460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 32896669 - 32896584
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||  ||||||||||    
32896669 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaacattccaacaat 32896584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 42993502 - 42993552
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||||    
42993502 gataaataactaatataattattattacgatatttgcccatataatgatat 42993552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 39727787 - 39727837
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
39727787 gataaatagctaatataattattgttacgatatttgcccacataatgatat 39727837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 39736041 - 39736091
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||| ||||    
39736041 gataaatagctaatataattattgttacgatatttgtccacataataatat 39736091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 1883340 - 1883375
Alignment:
280 gataaatagctaatataattattattatgatatttg 315  Q
    ||||||||||||||||||||||||||| ||||||||    
1883340 gataaatagctaatataattattattacgatatttg 1883375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 14417618 - 14417568
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||| |||||||||||||||||| |||||||  ||| ||||||||||    
14417618 gataaataactaatataattattattacgatattttcccacataatgatat 14417568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 22220230 - 22220280
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||||||||||||| |||| ||| |||||||| ||| ||||||||||    
22220230 gataaatagctaatataactattgttacgatatttgcccacataatgatat 22220280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 10238715 - 10238800
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||||    
10238715 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaacaat 10238800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 11840228 - 11840313
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||||    
11840228 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaacaat 11840313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 55003904 - 55003988
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaa 370  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||      ||  |||||||||||||||||||||| |||||||||    
55003904 gataaataactaatataattattattacgatatttgtccacataatgat------attggaatattattaaataataaaatattccaacaa 55003988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 26429920 - 26430003
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      || ||||||||||||||||||||||  ||||||||    
26429920 gataaatagctaatataattattattacgatatttgcccacataatgat------attagaatattattaaataataaaacattccaaca 26430003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 10244837 - 10244920
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||  ||     ||||||||||||||||||||| ||||||||    
10244837 gataaatagctaatataattattattacgatatttgcccacataatgatat-tga-----aatattattaaataataaaatattccaaca 10244920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 42191723 - 42191808
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||| ||||||    
42191723 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattctaacaat 42191808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 11846480 - 11846562
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    |||||||| |||||||||||||||||| |||||||| ||| ||||||||||        |||||||||||||||||||||| ||||||||    
11846480 gataaataactaatataattattattacgatatttgcccacataatgatat-------ggaatattattaaataataaaatattccaaca 11846562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 8331444 - 8331394
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
8331444 gataaatagctaatataattattgttacgatatttgtccacataatgatat 8331394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 9586515 - 9586565
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
9586515 gataaatagctaatataattattattacgatatttgcccacataatgatat 9586565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 17056294 - 17056377
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||| ||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||    
17056294 gataaatagataatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaaca 17056377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 42197665 - 42197715
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
42197665 gataaatagctaatataattattattacgatatttgcccacataatgatat 42197715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 10761153 - 10761203
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
10761153 gataaatagctaatataattattgttacgatatttgcccacataatgatat 10761203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 10769472 - 10769522
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
10769472 gataaatagctaatataattattgttacgatatttgcccacataatgatat 10769522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 23138919 - 23138969
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
23138919 gataaatagctaatataattattgttacgatatttgcccacataatgatat 23138969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 30051603 - 30051653
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
30051603 gataaatagctaatataattattgttacgatatttgcccacataatgatat 30051653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 38449566 - 38449616
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
38449566 gataaatagctaatataattattgttacgatatttgcccacataatgatat 38449616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 38456053 - 38456103
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
38456053 gataaatagctaatataattattgttacgatatttgcccacataatgatat 38456103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 28964536 - 28964487
Alignment:
281 ataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
28964536 ataaatagctaatataattattgttacgatatttgcccacataatgatat 28964487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 34300095 - 34300044
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatc 331  Q
    ||||||||| ||||||||||||||||||||| |||| |||  ||||||||||    
34300095 gataaatagttaatataattattattatgatgtttgcccacgtaatgatatc 34300044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 49151269 - 49151219
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||  ||| ||||||||||    
49151269 gataaatagctaatataattattgttacgatattttcccacataatgatat 49151219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 49157336 - 49157286
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||  ||| ||||||||||    
49157336 gataaatagctaatataattattgttacgatattttcccacataatgatat 49157286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 53071754 - 53071796
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatat 322  Q
    |||||||| |||||||||||||| |||||||||||| ||||||    
53071754 gataaataactaatataattattgttatgatatttgcccatat 53071796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 8474648 - 8474689
Alignment:
290 taatataattattattatgatatttgtccatataatgatatc 331  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
8474648 taatataattattattacgatatttgttcacataatgatatc 8474689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 23343220 - 23343164
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaat 336  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||    
23343220 gataaatagttaatataattattattatgatatttgtccacataatgatattagaat 23343164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 36750071 - 36749988
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||    
36750071 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaaca 36749988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 13461697 - 13461612
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||| ||||||    
13461697 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattctaacaat 13461612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 35085182 - 35085267
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||  ||||||||||    
35085182 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaacattccaacaat 35085267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 13455756 - 13455672
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaa 370  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||| |||||    
13455756 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattctaacaa 13455672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 23283900 - 23283850
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||||    
23283900 gataaataactaatataattattattacgatatttgtccacataatgatat 23283850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 31002033 - 31001983
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||||    
31002033 gataaatagctaatataattattgttatgatatttgcccacataatgatat 31001983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 13150192 - 13150242
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
13150192 gataaatagctaatataattattgttacgatatttgcccacataatgatat 13150242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 30964984 - 30964934
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
30964984 gataaatagctaatataattattgttacgatatttgcccacataatgatat 30964934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 35091155 - 35091205
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||  ||| ||||||||||    
35091155 gataaatagctaatataattattattacgatatttacccacataatgatat 35091205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 28683447 - 28683497
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||| |||||||||||||| ||| |||||||| ||| ||||||||||    
28683447 gataaataactaatataattattgttacgatatttgcccacataatgatat 28683497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 44717308 - 44717358
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| ||||| || ||| ||||||||||    
44717308 gataaatagctaatataattattgttacgatatgtgcccacataatgatat 44717358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 19879250 - 19879201
Alignment:
281 ataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||||||||||| ||||||||| |||||||  ||| ||||||||||    
19879250 ataaatagctaatatagttattattacgatattttcccacataatgatat 19879201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 25382038 - 25382123
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||||    
25382038 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaacaat 25382123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 1077901 - 1077818
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||    
1077901 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaaca 1077818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 50305854 - 50305771
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||    
50305854 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaaca 50305771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 12184099 - 12184184
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    |||||||| |||||||||||||||||| |||||||| ||| ||||||||||  ||     ||||||||||||||||||||| ||||||||||    
12184099 gataaataactaatataattattattacgatatttgcccacataatgatat-tga-----aatattattaaataataaaatattccaacaat 12184184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 25275549 - 25275599
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
25275549 gataaatagctaatataattattattacgatatttgcccacataatgatat 25275599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 44409657 - 44409607
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
44409657 gataaatagctaatataattattattacgatatttgcccacataatgatat 44409607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 31051201 - 31051151
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
31051201 gataaatagctaatataattattgttacgatatttgcccacataatgatat 31051151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 31057701 - 31057651
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
31057701 gataaatagctaatataattattgttacgatatttgcccacataatgatat 31057651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 25388005 - 25388055
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||  ||||||||||||||||| |||||||| ||| ||||||||||    
25388005 gataaataaataatataattattattacgatatttgcccacataatgatat 25388055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 33458431 - 33458494
Alignment:
302 tattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    |||||||||||||||||| ||| ||||||||||||      || ||||||||||||||| ||||||||||    
33458431 tattatgatatttgtccacatactgatatcagaat------ataattaaataataaaatattccaacaat 33458494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 34739642 - 34739593
Alignment:
281 ataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||||||||||||||||| ||| |||||||  ||| ||||||||||    
34739642 ataaatagctaatataattattgttacgatattttcccacataatgatat 34739593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 27954818 - 27954762
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaat 336  Q
    |||||||| |||||||||||| ||||| ||| |||| |||  |||||||||||||||    
27954818 gataaataactaatataattagtattacgatttttgcccacgtaatgatatcagaat 27954762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 25343284 - 25343201
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||    
25343284 gataaatagctaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaaca 25343201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 21191373 - 21191457
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    |||||||| |||||||||||||||||| |||||||| ||| ||||||||||        |||||||||||||||||||||| ||||||||||    
21191373 gataaataactaatataattattattacgatatttgcccacataatgatat-------ggaatattattaaataataaaatattccaacaat 21191457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 4580824 - 4580874
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
4580824 gataaatagctaatataattattattacgatatttgcccacataatgatat 4580874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 21771067 - 21771117
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
21771067 gataaatagctaatataattattgttacgatatttgtccacataatgatat 21771117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 25353870 - 25353820
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
25353870 gataaatagctaatataattattattacgatatttgcccacataatgatat 25353820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 17581261 - 17581176
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||| ||||||||||||||||| |||||||| ||| ||||||||      ||  |||||| ||||||||||||||| ||||||||||    
17581261 gataaatagttaatataattattattacgatatttgcccacataatgat------attggaatataattaaataataaaatattccaacaat 17581176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 8651306 - 8651356
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
8651306 gataaatagctaatataattattgttacgatatttgcccacataatgatat 8651356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 30906083 - 30906133
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||| |||||||||||||||||| |||||||| ||| ||||||||||    
30906083 gataaataactaatataattattattacgatatttgcccacataatgatat 30906133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 21197544 - 21197627
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaa 370  Q
    |||||||| |||||||||||||||||| |||||||  ||| ||||||||||        |||||||||||||||| ||||| |||||||||    
21197544 gataaataactaatataattattattacgatatttacccacataatgatat-------ggaatattattaaataaaaaaatattccaacaa 21197627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 21783828 - 21783884
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaat 336  Q
    ||||||||| ||||||||||||||||| |||||||  ||| ||||| |||| |||||    
21783828 gataaatagttaatataattattattacgatatttacccacataataatattagaat 21783884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 24287643 - 24287561
Alignment:
281 ataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||||||  ||     ||||||||||||||||||||| ||||||||    
24287643 ataaatagctaatataattattattacgatatttgcccacataatgatat-tga-----aatattattaaataataaaatattccaaca 24287561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 17627277 - 17627362
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    ||||||||||||||||||||||||||| |||||||  ||| ||||||||||| ||     ||||||||||||||||||||| || |||||||    
17627277 gataaatagctaatataattattattacgatattttcccacataatgatatc-ga-----aatattattaaataataaaatatttcaacaat 17627362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 6257707 - 6257757
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
6257707 gataaatagctaatataattattattacgatatttgcccacataatgatat 6257757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 10733852 - 10733902
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
10733852 gataaatagctaatataattattattacgatatttgcccacataatgatat 10733902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 10739839 - 10739889
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
10739839 gataaatagctaatataattattattacgatatttgcccacataatgatat 10739889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 10947621 - 10947671
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
10947621 gataaatagctaatataattattattacgatatttgcccacataatgatat 10947671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 10953608 - 10953658
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
10953608 gataaatagctaatataattattattacgatatttgcccacataatgatat 10953658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 26957306 - 26957356
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
26957306 gataaatagctaatataattattgttacgatatttgcccacataatgatat 26957356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 48160616 - 48160566
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
48160616 gataaatagctaatataattattgttacgatatttgcccacataatgatat 48160566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 48166835 - 48166785
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
48166835 gataaatagctaatataattattgttacgatatttgcccacataatgatat 48166785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 26972057 - 26972107
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| |||  ||||||| ||| ||||||||||    
26972057 gataaatagctaatataattattgttacaatatttgcccacataatgatat 26972107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 314
Target Start/End: Complemental strand, 50168252 - 50168218
Alignment:
280 gataaatagctaatataattattattatgatattt 314  Q
    ||||||||||||||||||||||||||| |||||||    
50168252 gataaatagctaatataattattattacgatattt 50168218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 35177405 - 35177365
Alignment:
335 atcagaatattattaaataataaaattttccaacaatatat 375  Q
    |||||||||| ||||||||||||||| |||||||| |||||    
35177405 atcagaatataattaaataataaaatattccaacattatat 35177365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 6179 - 6096
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    |||||||| |||||||||||||||||| |||||||| ||| ||||||||      ||  |||||||||||||||||||||| ||||||||    
6179 gataaataactaatataattattattacgatatttgcccacataatgat------attggaatattattaaataataaaatattccaaca 6096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 12052 - 12002
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
12052 gataaatagctaatataattattattacgatatttgcccacataatgatat 12002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 339038 - 338988
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||||    
339038 gataaatagctaatataattattgttatgatatttgcccacataatgatat 338988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 26383326 - 26383276
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||||    
26383326 gataaatagctaatataattattattatgatatttgcccacaaaatgatat 26383276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 28421461 - 28421511
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
28421461 gataaatagctaatataattattattacgatatttgcccacataatgatat 28421511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 5979679 - 5979762
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaaca 369  Q
    |||||||| |||||||||||||||||| |||||||| ||| ||||||||||  ||     ||||||||||||||||||||| ||||||||    
5979679 gataaataactaatataattattattacgatatttgcccacataatgatat-tga-----aatattattaaataataaaatattccaaca 5979762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 351444 - 351394
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
351444 gataaatagctaatataattattgttacgatatttgcccacataatgatat 351394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 3811671 - 3811721
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||    
3811671 gataaatagctaatataattattgttacgatatttgcccacataatgatat 3811721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 7608105 - 7608060
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataat 325  Q
    |||||||| || |||||||||||||||||||||||| |||||||||    
7608105 gataaataactgatataattattattatgatatttgcccatataat 7608060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 3817813 - 3817863
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||||||||||||||||||| ||| |||||||| | | ||||||||||    
3817813 gataaatagctaatataattattgttacgatatttgcctacataatgatat 3817863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 35148506 - 35148568
Alignment:
275 taatggataaatagctaatataattattattatgatatttg-tccatataatgatatcagaat 336  Q
    |||| ||||||||||||||||||||||| ||| ||||||||  ||| |||||||||| |||||    
35148506 taattgataaatagctaatataattattgttacgatatttgccccacataatgatattagaat 35148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 5849187 - 5849131
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaat 336  Q
    |||||||| |||||||||||||| ||| |||||||  ||| |||||||||| |||||    
5849187 gataaataactaatataattattgttacgatatttacccacataatgatattagaat 5849131  T

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Target: scaffold1114 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 720 - 670
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||| ||||||||||||||||||||||||||  ||| ||||||||||    
720 gataaataactaatataattattattatgatattttcccacataatgatat 670  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 13930 - 13845
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatatcagaatcagaatattattaaataataaaattttccaacaat 371  Q
    |||||||||||||||||||||||||||  ||||||  ||| ||||||||      ||  |||||| ||||||||||||||| ||||||||||    
13930 gataaatagctaatataattattattactatattttcccacataatgat------attggaatataattaaataataaaatattccaacaat 13845  T

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Target: scaffold0363 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 1101 - 1151
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    |||||||| |||||||||||||||||| |||||||  ||| ||||||||||    
1101 gataaataactaatataattattattacgatattttcccacataatgatat 1151  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 173392 - 173442
Alignment:
280 gataaatagctaatataattattattatgatatttgtccatataatgatat 330  Q
    ||||||| ||||||||||||||||||| |||||||| ||| ||||| ||||    
173392 gataaatcgctaatataattattattacgatatttgcccacataataatat 173442  T

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