View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15036_high_46 (Length: 210)
Name: NF15036_high_46
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_high_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 7063285 - 7063148
Alignment:
| Q |
55 |
tgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt |
154 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7063285 |
tgaataactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt |
7063186 |
T |
|
| Q |
155 |
attcatgattagaagagctttgagtttgatttactttt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7063185 |
attcatgattagaagagctttgagtttgatttactttt |
7063148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 7058819 - 7058725
Alignment:
| Q |
19 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgctt |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
7058819 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatcaacgtagtagtcgaataaaagtgctt |
7058725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 7014052 - 7013973
Alignment:
| Q |
19 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt |
98 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7014052 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt |
7013973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 7029410 - 7029331
Alignment:
| Q |
19 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt |
98 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7029410 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt |
7029331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 7029245 - 7029204
Alignment:
| Q |
118 |
tttatattggaatggttaaagtttaaatggtattagtattca |
159 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7029245 |
tttatgttggaatggttaaagtttagatggtattagtattca |
7029204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 7013887 - 7013846
Alignment:
| Q |
118 |
tttatattggaatggttaaagtttaaatggtattagtattca |
159 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
7013887 |
tttatgttgaaatggttaaagtttagatggtattagtattca |
7013846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 7058657 - 7058608
Alignment:
| Q |
118 |
tttatattggaatggttaaagtttaaatggtattagtattcatgattaga |
167 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||| ||||||||||||| |
|
|
| T |
7058657 |
tttatattggaatggttgaagtttagcttgtattaggattcatgattaga |
7058608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University