View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15036_high_7 (Length: 400)
Name: NF15036_high_7
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 4 - 383
Target Start/End: Complemental strand, 3156890 - 3156508
Alignment:
| Q |
4 |
gtgcttcaagtttggggcaatcttactttaatcctgctctttttcgaccttacgattataggtcactcggggtcagaaccgattcaatgattcaaaaacc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3156890 |
gtgcttcaagtttggggcaatcttacttttatcctactctttttcgaccttacgattataggtcactcggggtcagaaccgagtcaatgattcaaaaacc |
3156791 |
T |
|
| Q |
104 |
accttatattagccccaagattaccccacacagttttgggtaccgtaatagtgctttgttgcaagagatcttaaacccttctcttgtgtcattgagaaat |
203 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3156790 |
accttatattagccctaagattaccccacacagttttgggtaccgtcatagtgctttgttgcaagagatcttaaacccttctcttgtgtcattgagaaat |
3156691 |
T |
|
| Q |
204 |
atgaggggtaataacagcgggtttggaaacctaggtattggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgcta---taa |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3156690 |
atgaggggtggtaacagcgggtttggaaacctagctattggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctattctaa |
3156591 |
T |
|
| Q |
301 |
aattaggagattcttctacaaatgttgctacaagttcaaactcaaacatagaaaagcaaattaatgtggctcctacttctacc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3156590 |
aattaggagattcttctacaaatgttgctgcaagttcaaactcaaacatagaaaagcaaattattgtggctcctacttctacc |
3156508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 59 - 383
Target Start/End: Complemental strand, 3139103 - 3138776
Alignment:
| Q |
59 |
ttataggtcactcggggtcagaaccgattcaatgattcaaaaaccaccttatattagccccaagattaccccacacagttttgggtaccgtaatagtgct |
158 |
Q |
| |
|
|||||||||||| ||||| ||| | || |||||||||||||||||||||||| ||| ||| | ||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
3139103 |
ttataggtcacttggggttagatcagagtcaatgattcaaaaaccaccttattttaaccctagaattactccacatagttttgggtatagtcatagtgct |
3139004 |
T |
|
| Q |
159 |
ttgttgcaagagatcttaaacccttctcttgtgtcattgagaaatatgaggggtaataacagcgggtttggaaacctaggtattggtggtgcaagtactt |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||| |||| | ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
3139003 |
ttgttgcaagagatgttaaacccttctcttgtgtcattgagaaatatgggggttggtaatagcgtgattggaaatctaggtattggtggtgcaactactt |
3138904 |
T |
|
| Q |
259 |
caaggattgaagatggtacaaataataaaataggtgcta---taaaattaggagattcttctacaaatgttgctacaagttcaaactcaaacatagaaaa |
355 |
Q |
| |
|
||| ||| ||| |||||||| |||||||||| ||||||| || |||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
3138903 |
caaagatcgaatatggtacatataataaaattggtgctattttagaattgggagattcttctacaaaggttgctacaatttcaaactcaaacatggaaaa |
3138804 |
T |
|
| Q |
356 |
gcaaattaatgtggctcctacttctacc |
383 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |
|
|
| T |
3138803 |
gcaaattattgtggctcctaattctacc |
3138776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 237 - 380
Target Start/End: Original strand, 3167634 - 3167780
Alignment:
| Q |
237 |
ggtattggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgcta---taaaattaggagattcttctacaaatgttgctacaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3167634 |
ggtattggtggtgcaagtacttcaaggatagaagatggtacaaataataaaattggtgctattctaaaattaggagattcttctacaaatgttgctacaa |
3167733 |
T |
|
| Q |
334 |
gttcaaactcaaacatagaaaagcaaattaatgtggctcctacttct |
380 |
Q |
| |
|
||||||||||||| ||||||| | || | ||||||||||| |||| |
|
|
| T |
3167734 |
gttcaaactcaaaggtagaaaaagatatcattgtggctcctatttct |
3167780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 379
Target Start/End: Original strand, 2023212 - 2023346
Alignment:
| Q |
248 |
tgcaagtacttcaaggattgaagatggtacaaataataaaataggtgcta---taaaattaggagattcttctacaaatgttgctacaagttcaaactca |
344 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||||| ||| ||| |||| || | ||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
2023212 |
tgcaactactttaaggattgaagatggtgaaaataataaaattggtactaatctaaagtttgaagattcttctacaaatgttacaacaagttcaaactca |
2023311 |
T |
|
| Q |
345 |
aacatagaaaagcaaattaatgtggctcctacttc |
379 |
Q |
| |
|
||| |||||||| |||||| | ||||||| ||||| |
|
|
| T |
2023312 |
aacctagaaaagaaaattattatggctcccacttc |
2023346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 23852275 - 23852636
Alignment:
| Q |
13 |
gtttggggcaatcttactttaatcctgctctttttcgaccttacgattataggtcactcggggtcagaaccgattcaatgattcaaaaaccaccttatat |
112 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||| |||||||||||| ||||| | |||||||| ||||||||||||||||||| |||| | |
|
|
| T |
23852275 |
gtttagggcaatcttactttaactctactctttttcgaccttatgattataggtcaatcgggattagaaccgagtcaatgattcaaaaaccacattattt |
23852374 |
T |
|
| Q |
113 |
tagccccaagattaccccacacagttttgggtaccgtaatagtgctttgttgcaagagatcttaaacccttctcttgtgtcattgagaaatatgaggggt |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||| |
|
|
| T |
23852375 |
tagccctaagattaccccacacagttttgggtacagccatagtgctttgttgcaagatatcttaaatccttctctcgtgtcattgagaaatatggggggt |
23852474 |
T |
|
| Q |
213 |
aataacagcgggtttggaaacctaggtattggtggtgcaagtacttcaaggattgaagatggtaca---aataataaaataggtgcta---taaaattag |
306 |
Q |
| |
|
| ||| || ||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||| ||||||||||| ||||||| ||||||| | |
|
|
| T |
23852475 |
agtaatagagggtttggaaacctaggtattggcggtgcaactacttcaagaatcgaagatggtacaaataataataaaattggtgctattttaaaattgg |
23852574 |
T |
|
| Q |
307 |
gagattcttctacaaatgttgctacaagttcaaactcaaacatagaaaagcaaattaatgtg |
368 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
23852575 |
gagattcttctacaaatattgctacaagttcaaactcaaacatggaaaagcaaattattgtg |
23852636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 383
Target Start/End: Original strand, 23856930 - 23857037
Alignment:
| Q |
279 |
aataataaaataggtgctat---aaaattaggagattcttctacaaatgttgctacaagttcaaactcaaacatagaaaagcaaattaatgtggctccta |
375 |
Q |
| |
|
||||||||||| |||||||| |||||| |||| ||||||||||||| || ||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
23856930 |
aataataaaattggtgctattttaaaattgggagtttcttctacaaatattaaaacaagtttaaactcaaacatagaaaagaaaattattgtggctccta |
23857029 |
T |
|
| Q |
376 |
cttctacc |
383 |
Q |
| |
|
| |||||| |
|
|
| T |
23857030 |
catctacc |
23857037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 23856852 - 23856928
Alignment:
| Q |
22 |
aatcttactttaatcctgctctttttcgaccttacgattataggtcactcggggtcagaaccgattcaatgattcaaa |
99 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||||||| |||| | |||||| ||||||||||||| |
|
|
| T |
23856852 |
aatcttactttaatcctactcttttttgaccttaagattataggtcact-tgggttaaaaccgagtcaatgattcaaa |
23856928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 234 - 355
Target Start/End: Original strand, 1725234 - 1725358
Alignment:
| Q |
234 |
ctaggtattggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctata---aaattaggagattcttctacaaatgttgcta |
330 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||||| | ||||||||| |
|
|
| T |
1725234 |
ctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttctaaacatgttgcta |
1725333 |
T |
|
| Q |
331 |
caagttcaaactcaaacatagaaaa |
355 |
Q |
| |
|
||||||||||| ||| |||| |||| |
|
|
| T |
1725334 |
caagttcaaacgcaatcataaaaaa |
1725358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 1739596 - 1739697
Alignment:
| Q |
241 |
ttggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctat---aaaattaggagattcttctacaaatgttgctacaagttc |
337 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||| ||| | || || |||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1739596 |
ttggtggtgcaactgcttcgaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttc |
1739695 |
T |
|
| Q |
338 |
aa |
339 |
Q |
| |
|
|| |
|
|
| T |
1739696 |
aa |
1739697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 1744933 - 1745034
Alignment:
| Q |
241 |
ttggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctataa---aattaggagattcttctacaaatgttgctacaagttc |
337 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||| || || |||||||| | |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1744933 |
ttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccacaagttc |
1745032 |
T |
|
| Q |
338 |
aa |
339 |
Q |
| |
|
|| |
|
|
| T |
1745033 |
aa |
1745034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 1739425 - 1739467
Alignment:
| Q |
241 |
ttggtggtgcaagtacttcaaggattgaagatggtacaaataa |
283 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1739425 |
ttggtggttcaactacttcaaggattgaagatggtacaaataa |
1739467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 1744768 - 1744805
Alignment:
| Q |
241 |
ttggtggtgcaagtacttcaaggattgaagatggtaca |
278 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1744768 |
ttggtggtgcaattacttcaaggattgaagatggtaca |
1744805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 383
Target Start/End: Original strand, 1760716 - 1760801
Alignment:
| Q |
298 |
taaaattaggagattcttctacaaatgttgctacaagttcaaactcaaacatagaaaagcaaattaatgtggctcctacttctacc |
383 |
Q |
| |
|
||||||| ||| |||||||||||||| ||| ||||||||||||||||| |||| | || ||| ||||||| ||| ||||| |||| |
|
|
| T |
1760716 |
taaaattcggatattcttctacaaatattgatacaagttcaaactcaatcatacacaataaaaataatgtgtctcttacttatacc |
1760801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 1744599 - 1744651
Alignment:
| Q |
90 |
atgattcaaaaaccaccttatattagccccaagattaccccacacagttttgg |
142 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
1744599 |
atgattcaaaaaccatcttatattaaccccgggattaccccacatggttttgg |
1744651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 348
Target Start/End: Complemental strand, 7490927 - 7490816
Alignment:
| Q |
234 |
ctaggtattggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgcta---taaaattaggagattcttctacaaatgttgcta |
330 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||| |||||| |
|
|
| T |
7490927 |
ctaggttttggtggagcaagtacttcaagaattgaagatggtacaaataataaaattggtgctattctaaaacttggagattcttcta------ttgcta |
7490834 |
T |
|
| Q |
331 |
caagttcaaactcaaaca |
348 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
7490833 |
caagttcaagctcaaaca |
7490816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 7484173 - 7484109
Alignment:
| Q |
234 |
ctaggtattggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctat |
298 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
7484173 |
ctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctat |
7484109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 9011719 - 9011642
Alignment:
| Q |
306 |
ggagattcttctacaaatgttgctacaagttcaaactcaaacatagaaaagcaaattaatgtggctcctacttctacc |
383 |
Q |
| |
|
|||||||||| ||||||| ||||| || ||||||||||||||| ||| ||| |||||| |||||||||||||||||| |
|
|
| T |
9011719 |
ggagattcttttacaaatattgcttcatgttcaaactcaaacaaagacaaggaaattatcgtggctcctacttctacc |
9011642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 9011973 - 9011880
Alignment:
| Q |
40 |
ctctttttcgaccttacgattataggtcactcggggtcagaaccgattcaatgattcaaaaaccaccttatattagccccaagattaccccaca |
133 |
Q |
| |
|
|||||||| |||||| |||||||| || |||||| |||| || ||||||||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
9011973 |
ctctttttacaccttataattataggctacccggggttagaatggaatcaatgattcaaaaaccaccttatactagcgccaaaattaccccaca |
9011880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 8872300 - 8872374
Alignment:
| Q |
299 |
aaaattaggagattcttctacaaatgttgctacaagttcaaactcaaacatagaaaagcaaattaatgtggctcc |
373 |
Q |
| |
|
|||||| ||||| ||| ||||||||||| | ||||||||||||||||||| ||| ||| ||| || | ||||||| |
|
|
| T |
8872300 |
aaaatttggagagtctactacaaatgttcccacaagttcaaactcaaacaaagacaagaaaaatattttggctcc |
8872374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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