View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_high_9 (Length: 396)

Name: NF15036_high_9
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_high_9
NF15036_high_9
[»] chr1 (17 HSPs)
chr1 (20-387)||(13271854-13272221)
chr1 (27-255)||(13244213-13244438)
chr1 (28-255)||(13086383-13086610)
chr1 (37-200)||(19278912-19279075)
chr1 (58-176)||(12963679-12963797)
chr1 (44-207)||(13069916-13070079)
chr1 (44-202)||(13007489-13007647)
chr1 (62-202)||(30367853-30367993)
chr1 (59-202)||(13064958-13065101)
chr1 (44-207)||(13101289-13101452)
chr1 (45-255)||(19727443-19727647)
chr1 (44-167)||(13204748-13204871)
chr1 (68-255)||(13214132-13214313)
chr1 (29-200)||(13080609-13080780)
chr1 (48-163)||(13161814-13161929)
chr1 (49-163)||(13130122-13130236)
chr1 (48-163)||(13094692-13094807)
[»] chr6 (1 HSPs)
chr6 (43-167)||(31396455-31396580)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 13271854 - 13272221
Alignment:
Q  20 ttcaacatttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaaca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13271854 ttcaacatttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattaggatgagttgaaaca 13271953  T
Q  120 agccaaaagaaccaacttagacctgaactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatacttttcattttcattcattt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13271954 agccaaaagaaccaacttagacctgaactaactgttccatttcctgcagccaagagagtgaatgcagtgtctctaatatacttttcattttcattcgttt 13272053  T
Q  220 cttcctttcccaatccttctttcattagtgcttttaacatgccaacaggttgaatttccgcaacatcttcattggtttttaatctacttttatcatcatc 319  Q
    ||||||||||||| ||||| |||||||||| ||||||||  |||||||| |||||||| |||||||||||| |||||||||||||||||||||  |||||    
T  13272054 cttcctttcccaagccttccttcattagtggttttaacacaccaacaggatgaatttcagcaacatcttcactggtttttaatctacttttattttcatc 13272153  T
Q  320 atattttgaatgcattatcattttgaacaagaattgatgaatattttcttgagctacactattcttct 387  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  13272154 atatttcgaatgcattatcattttgaacaagaattgatgaatatttttttgagctatactgttcttct 13272221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 13244438 - 13244213
Alignment:
Q  27 tttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaa 126  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  13244438 tttaaattattgattaaattctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttgaaacaagccaaa 13244339  T
Q  127 agaaccaacttagacctgaactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatacttttcattttcattcatttcttcctt 226  Q
    |||||||||||||||||||||||| |||||||||||||||  | |||||| | |  ||||||||||| |||||||| ||||   |  |||||||  ||||    
T  13244338 agaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatttaccgcagtgtctctgatatacttctcat---cgatcatttccccctt 13244242  T
Q  227 tcccaatccttctttcattagtgctttta 255  Q
    |||||||| ||| ||||||||| ||||||    
T  13244241 tcccaatctttccttcattagttctttta 13244213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 28 - 255
Target Start/End: Original strand, 13086383 - 13086610
Alignment:
Q  28 ttaaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaa 127  Q
    |||||||| ||| |||||| ||||| |||| ||||||||||||||| ||||||||||| | ||| |||||||| ||   ||||||||||||||||||| |    
T  13086383 ttaaattagtgaccaaattatcctcatgtgatagacaattatcttttatctcttgaattattttagcttccactatgaaatgagttgaaacaagccaaga 13086482  T
Q  128 gaaccaacttagacctgaactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatacttttcattttcattcatttcttccttt 227  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||||||| ||| |||||  |||||| || |||    
T  13086483 gaaccaacttagacctgaactaactgttccacttcctgcagctaagagattgaatgcagtgtctctaatatacttatcaatttcaaccatttcctcattt 13086582  T
Q  228 cccaatccttctttcattagtgctttta 255  Q
    ||||| ||||| ||||| ||||| ||||    
T  13086583 cccaagccttccttcatcagtgccttta 13086610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 19279075 - 19278912
Alignment:
Q  37 tgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaact 136  Q
    |||||||||| ||||||| ||||| ||| ||| | |||||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||| |    
T  19279075 tgatcaaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaatt 19278976  T
Q  137 tagacctgaactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatac 200  Q
     ||||| ||||||| ||||||||| ||||| ||||||||| |||  ||||||||||||||||||    
T  19278975 gagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtctctaatatac 19278912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 12963797 - 12963679
Alignment:
Q  58 ttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttcc 157  Q
    ||||| |||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12963797 ttagaaaattatctttaatctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttcc 12963698  T
Q  158 atttcctgctgccaagaga 176  Q
    | ||||||| || ||||||    
T  12963697 acttcctgcagctaagaga 12963679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 207
Target Start/End: Complemental strand, 13070079 - 13069916
Alignment:
Q  44 attctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 143  Q
    |||||||||||||||  | || |||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  13070079 attctcctcttgtgtgggccagttatcttttatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacct 13069980  T
Q  144 gaactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatacttttcat 207  Q
    ||| ||||||| ||||||||||||   ||||||| || |||| ||||||||| |||||| ||||    
T  13069979 gaagtaactgtgccatttcctgctaaaaagagagagagtgcattgtctctaagatacttctcat 13069916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 13007489 - 13007647
Alignment:
Q  44 attctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 143  Q
    |||||||||||||||  | || ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  13007489 attctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacct 13007588  T
Q  144 gaactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatactt 202  Q
    ||||||| ||| ||||||||||||   ||||||||||   || ||||||||| ||||||    
T  13007589 gaactaattgtgccatttcctgctaaaaagagagtgaggacattgtctctaagatactt 13007647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 30367993 - 30367853
Alignment:
Q  62 acaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccattt 161  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| ||| |||||     
T  30367993 acaattatctttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccatta 30367894  T
Q  162 cctgctgccaagagagtgaatgcagtgtctctaatatactt 202  Q
    ||||||  ||| |||| || |||| ||||||||| ||||||    
T  30367893 cctgctaacaaaagagagagtgcattgtctctaagatactt 30367853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 13065101 - 13064958
Alignment:
Q  59 tagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttcca 158  Q
    ||||||||||||||| |||||||||||||  || |||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||||||| ||     
T  13065101 tagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccg 13065002  T
Q  159 tttcctgctgccaagagagtgaatgcagtgtctctaatatactt 202  Q
    ||||| |||  ||| ||| ||| |||||||||||||| ||||||    
T  13065001 tttcccgctaacaatagattgactgcagtgtctctaagatactt 13064958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 13101289 - 13101452
Alignment:
Q  44 attctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 143  Q
    |||||||||||||||  |||| ||||||||||| |||||||| | ||| |||||||||||||||||||| ||||||||||| || |||||||| ||| ||    
T  13101289 attctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccagaaaaaccaactgagagct 13101388  T
Q  144 gaactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatacttttcat 207  Q
    ||||||||||  ||||||||||||   |||||||||| | || ||||||||| |||||| ||||    
T  13101389 gaactaactgggccatttcctgctaaaaagagagtgattacattgtctctaagatacttctcat 13101452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 19727443 - 19727647
Alignment:
Q  45 ttctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctg 144  Q
    ||||||||||||||  | || ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||    
T  19727443 ttctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacctg 19727542  T
Q  145 aactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatacttttcattttcattcatttcttcctttcccaatccttctttcat 244  Q
     ||||||||  ||||||||||||   |||||||||| |  | ||||||||| ||||      || |||||||||||  |||||||  ||||||| |||||    
T  19727543 tactaactgggccatttcctgctaaaaagagagtgagtaaattgtctctaagatac------ttctcattcatttccccctttccagatccttccttcat 19727636  T
Q  245 tagtgctttta 255  Q
    |||||||||||    
T  19727637 tagtgctttta 19727647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 13204748 - 13204871
Alignment:
Q  44 attctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacct 143  Q
    |||||||||||||||  |||| ||||||||||| |||||||| | ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  13204748 attctcctcttgtgtaggacagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaaaaaccaacttagacct 13204847  T
Q  144 gaactaactgttccatttcctgct 167  Q
    |||||| |||  ||| ||||||||    
T  13204848 gaactagctggaccacttcctgct 13204871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 255
Target Start/End: Original strand, 13214132 - 13214313
Alignment:
Q  68 atctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccatttcctgct 167  Q
    |||||| || |||||||||| ||| |||||||||||| ||||||||||||||||||| || |||||| | |||||||||| |||||  ||||||||||||    
T  13214132 atcttttatttcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgct 13214231  T
Q  168 gccaagagagtgaatgcagtgtctctaatatacttttcattttcattcatttcttcctttcccaatccttctttcattagtgctttta 255  Q
       ||||||||||  ||| ||||||||| ||||      || |||| ||||||  ||||||| |||||||| ||||||||||||||||    
T  13214232 aaaaagagagtgatcgcattgtctctaagatac------ttctcatccatttccccctttccaaatccttccttcattagtgctttta 13214313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 13080780 - 13080609
Alignment:
Q  29 taaattattgatcaaattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaag 128  Q
    |||||||  ||| |||||||| || ||| ||| |||||||||||||||||||||||||| |||  | || ||  ||||||| |||||||| ||||||||     
T  13080780 taaattagcgataaaattctcatcgtgttttaaacaattatctttgatctcttgaataattttaccatctaccctaggatgcgttgaaaccagccaaaaa 13080681  T
Q  129 aaccaacttagacctgaactaactgttccatttcctgctgccaagagagtgaatgcagtgtctctaatatac 200  Q
    |||||| | ||||||| ||||| |||||||||||||||  |||||||| ||| || ||| ||||||||||||    
T  13080680 aaccaagtgagacctgtactaattgttccatttcctgcaaccaagagattgattgtagtatctctaatatac 13080609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 13161814 - 13161929
Alignment:
Q  48 tcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 147  Q
    |||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||| ||||||||  ||||| || |||||||| ||| ||||||    
T  13161814 tcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagctgaac 13161913  T
Q  148 taactgttccatttcc 163  Q
    ||| ||  ||||||||    
T  13161914 taattgaaccatttcc 13161929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 13130122 - 13130236
Alignment:
Q  49 cctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaact 148  Q
    ||||||||||||  ||||||||||||||||||||||| | |||| ||||||||||||||| |||||||| |||||| || |||||||| ||| |||||||    
T  13130122 cctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaact 13130221  T
Q  149 aactgttccatttcc 163  Q
    || ||  ||||||||    
T  13130222 aattgaaccatttcc 13130236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 13094692 - 13094807
Alignment:
Q  48 tcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaac 147  Q
    |||||| ||||||  ||||||||| ||||||||||||| | |||| ||||||||||||||| |||||||| |||||| || |||||||| ||| ||||||    
T  13094692 tcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaac 13094791  T
Q  148 taactgttccatttcc 163  Q
    ||| ||| ||||||||    
T  13094792 taattgtaccatttcc 13094807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 31396580 - 31396455
Alignment:
Q  43 aattctcctcttgtgttagacaattatctttgatctcttgaataagttttgcttccacaataggatgagttg-aaacaagccaaaagaaccaacttagac 141  Q
    ||||||| | ||| ||| |||| |||||||  ||||||||||||| ||| ||||||||| |||||||||||| |||||||||| || |||||||  ||||    
T  31396580 aattctcatgttgggtttgacagttatcttgaatctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagac 31396481  T
Q  142 ctgaactaactgttccatttcctgct 167  Q
     |||||||| ||| ||||||||||||    
T  31396480 ttgaactaattgtgccatttcctgct 31396455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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