View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_10 (Length: 397)
Name: NF15036_low_10
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 48074689 - 48074307
Alignment:
| Q |
19 |
atcattgcttttcccgaacaaccttccacaactacaccattgatatcgaaggtggaggagttttcaccggtggttgatctccactccaatgcaaatgcta |
118 |
Q |
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| T |
48074689 |
atcattgcttttcccgaacaaccttccacaactacaccattgatatcgaaggtggaggagttttcaccggtggttgatctccactccaatgcaaatgcta |
48074590 |
T |
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| Q |
119 |
atgaacttgttgaagaatacaaatatatggaagaagacgaagaaggtgattttgacgatgaatggcttgcaagggtgcttaactggagtcagaatattaa |
218 |
Q |
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| T |
48074589 |
atgaacttgttgaagaatacaaatatatggaagaagacgaagaaggtgattttgacgatgaatggcttgcaagggtgcttaactggagtcagaatattaa |
48074490 |
T |
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| Q |
219 |
ggttggggacactagtgagtggttttgattttaattaatcaagtgtat------nnnnnnnntatgagacctgttgctgtactcattacaagagtattag |
312 |
Q |
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| T |
48074489 |
ggttggggacactagtgagtggttttgattttaattaatcaagtgtataaaaaaaaaaaatatatgagacctgttgctgtactcattacaagagtattag |
48074390 |
T |
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| Q |
313 |
ctataataagctactatgaagtatagctagcagttacatatgcatatatcttcatctttgttgatgcaacttagtttttcatt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48074389 |
ctataataagctactatgaagtatagctagcagttacatatgcatatatcttcatctttgttgatgcaacttagttttacatt |
48074307 |
T |
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