View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_15 (Length: 373)
Name: NF15036_low_15
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 32376733 - 32376423
Alignment:
| Q |
20 |
tgttggtgctctcttgctcaagaagctagaactgggaacagttatgatctcttggaagataagttatccatgaaagaaattgattcccgcgatcaatctt |
119 |
Q |
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| T |
32376733 |
tgttggtgctctcttgctcaagaagccaggactgggaatagttatgatatcttggaagataagttatccatgaaagaaattgattcccgcgatcaatctt |
32376634 |
T |
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| Q |
120 |
cggctacggaagacgtagtatcagccaaatctggctcaagttcttctcttgaaagaggtaaagatggaacaatgaatccaccaatagcattagtaataca |
219 |
Q |
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| T |
32376633 |
cggctacggaagacgtagtatcagccaaatctggctcaagttcttctcttgaaagaggtaaagatggaacaatgaatcccccaatagcattagtagtaca |
32376534 |
T |
|
| Q |
220 |
aagagaatctctatagtctctgaaagcaaaagagggaaatgattcttcttgattgctatgtatcactacattgtttgagatgatccctcaaatttctatg |
319 |
Q |
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||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
32376533 |
aagagaagctctttagtctctgaaagtaaaagagggaaatgattcttcttgattgttatgtataactacattgtttgagatgatcccttaaatttctatg |
32376434 |
T |
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| Q |
320 |
taaacaatttt |
330 |
Q |
| |
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||||| ||||| |
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| T |
32376433 |
taaaccatttt |
32376423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 32365048 - 32364722
Alignment:
| Q |
20 |
tgttggtgctctcttgctcaagaagctagaactgggaacagttatgatctcttggaagataagttatccatgaaagaaattgattcccgcgatcaatctt |
119 |
Q |
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|||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
32365048 |
tgttggtgctctcttgctcaagaagccaggactgggaatagttatgatatcttggaagataagttatccatgaaagaaattgatactcgcgatcaatctt |
32364949 |
T |
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| Q |
120 |
cggctac----------gga--agacgtagtatcagccaaatctggctcaagttcttctcttgaaagaggtaaagatggaacaatgaatccaccaatagc |
207 |
Q |
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||| | | ||| ||||||||||||| |||||| | | ||||||||||||||||| || ||||||||| ||| ||||||||||||||||| |
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| T |
32364948 |
cggtttcatgtttggctggacaagacgtagtatcaagcaaatccgacacaagttcttctcttgaacgacgtaaagatgaaacgatgaatccaccaatagc |
32364849 |
T |
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| Q |
208 |
attagtaatacaaagagaatctc-ta---tagtctctgaaagcaaaagagggaaatgattcttcttgattgctatgtatcactacattgtttgagatgat |
303 |
Q |
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|||| |||||||||||||| ||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32364848 |
attattaatacaaagagaagctcctaccttattctctgaaagcaaaagagggaaatgattcttcttgattgttatgtatcactacattgtttgagatgat |
32364749 |
T |
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| Q |
304 |
ccctcaaatttctatgtaaacaatttt |
330 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
32364748 |
ccctcaaatttctatgtaaaccatttt |
32364722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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