View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_16 (Length: 367)
Name: NF15036_low_16
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_16 |
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| [»] chr5 (3 HSPs) |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 221 - 367
Target Start/End: Original strand, 17584840 - 17584986
Alignment:
| Q |
221 |
gtccttgggttggatattacggtgaagtgactgagtagagcaactattgattccttttgagaaattctagattgtcaaaacatgtgtaacatatattcta |
320 |
Q |
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| T |
17584840 |
gtccttgggttggatattacggtgaagcaattgagtagagcaactattgattacttttgagaaattctggattgtcaaaacatgtacaacatatattcta |
17584939 |
T |
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| Q |
321 |
gaaatccatatttttgctttgtctttaaaaagaatttagaaactaag |
367 |
Q |
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| T |
17584940 |
gaaatccatatttttgctttgtttttaaaaagagattagaagctaag |
17584986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 17584717 - 17584842
Alignment:
| Q |
34 |
tcaagtatgacgaaactgaacatgccaatctaaaaccaaaagacgtcgaatgcgccgcattaaagtaggaactaccccgctaacctcacaattat-tgta |
132 |
Q |
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| T |
17584717 |
tcaagtatgacagaactgaacatgccaatataaagccaaaagatgttgaatgtgccgcattgaagtaggaaccaccaccctaaattttcaattatctgta |
17584816 |
T |
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| Q |
133 |
accatgtctaaaagaattttagagtc |
158 |
Q |
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| T |
17584817 |
accatgtctaaaagaattttagagtc |
17584842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 35603917 - 35603969
Alignment:
| Q |
128 |
ttgtaaccatgtctaaaagaattttagagtcactttctacgatgagatgagaa |
180 |
Q |
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| T |
35603917 |
ttgtaaccatgtataaaagaattttagagttactttctccaacgagatgagaa |
35603969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 221 - 367
Target Start/End: Complemental strand, 14741357 - 14741210
Alignment:
| Q |
221 |
gtccttgggttggatattacggtgaagtgactgagtagagcaactattgattccttttgagaaattctagattgtcaaaacatgt-gtaacatatattct |
319 |
Q |
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||||||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
14741357 |
gtccttgagttggatattacggtgaagcgattgagtagagcaactattgattacttttgagaaattctggattgtcaaaacatgtaacaacatatattct |
14741258 |
T |
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| Q |
320 |
agaaatccatatttttgctttgtctttaaaaagaatttagaaactaag |
367 |
Q |
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| T |
14741257 |
agaaatccatatttttgctttgtttttaaaaagagattagaagctaag |
14741210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 25852674 - 25852619
Alignment:
| Q |
133 |
accatgtctaaaagaattttagagtcactttctacgatgagatgagaagttctctc |
188 |
Q |
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| T |
25852674 |
accatgtataagagaattttagagtcactttctacaacgagataagaagttctctc |
25852619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 14742352 - 14742294
Alignment:
| Q |
47 |
aactgaacatgccaatctaaaaccaaaagacgtcgaatgcgccgcattaaagtaggaac |
105 |
Q |
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| T |
14742352 |
aactgaacatgccaatataaagccaaaagacattgaatgtgccgcattgaagtaggaac |
14742294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 14741384 - 14741355
Alignment:
| Q |
129 |
tgtaaccatgtctaaaagaattttagagtc |
158 |
Q |
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| T |
14741384 |
tgtaaccatgtctaaaagaattttagagtc |
14741355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 38929887 - 38929919
Alignment:
| Q |
35 |
caagtatgacgaaactgaacatgccaatctaaa |
67 |
Q |
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| T |
38929887 |
caagtatgacgaaactgaacatgtcaatctaaa |
38929919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 3871216 - 3871256
Alignment:
| Q |
35 |
caagtatgacgaaactgaacatgccaatctaaaaccaaaag |
75 |
Q |
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| T |
3871216 |
caagtatgacgaaactggacatgccaatccaaagccaaaag |
3871256 |
T |
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