View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_18 (Length: 360)
Name: NF15036_low_18
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 52097289 - 52096936
Alignment:
| Q |
6 |
acttgattggatgcagattgatcgtaatagttattcagctccgcagtcaaatttaggctcaattcaagcaactaaatatacagaattggagcatctaaaa |
105 |
Q |
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| T |
52097289 |
acttgattggatgcagattgatcgtaatagttattcagctccgcagtcaaatttaggctcaattcaagcaactaaatatacagaattggagcatctaaaa |
52097190 |
T |
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| Q |
106 |
ttggtaaagttcaagggtttcacaaatccaatagctgaaatttcagtggcaaaaatattaattcagctagtcaagggaaagcctccaaagatagagacgt |
205 |
Q |
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| T |
52097189 |
ttggtaaagttcaagggtttcacaaatccaatagctgaaatttcagtggcaaaaatattaattcagctagtcaagggaaagcctccaaagatagagacgt |
52097090 |
T |
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| Q |
206 |
caagtgggagcaatttggatgtagcaattatgcaatgatctaccaagtcatatttgagacgcgttagacattaaatatggatctctctgccagccaaaat |
305 |
Q |
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| T |
52097089 |
caagtgggagcaatttggatgtagcaattatgcaatgatctacctaatcatatttgagacgcattagacattaaatatggatctctctaccagccaaaat |
52096990 |
T |
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| Q |
306 |
tcaaatctagattcgtcacattgcggaagtctaagccatttccgatagagaaagt |
360 |
Q |
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| T |
52096989 |
tcaaatctagattcgtcacattgcggaagtct-agccatttccgatagagaaagt |
52096936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 7661327 - 7661455
Alignment:
| Q |
70 |
caagcaactaaatatacagaattggagcatctaaaattggtaaagttcaagggtttcacaaatccaatagctgaaatttcagtggcaaaaatattaattc |
169 |
Q |
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| T |
7661327 |
caagcaactaaatgcacaaaattagaacatgtaaatttgataaagtttatgggatttacaagtcgaaaagatgaaatttcattggcaaaatgtttaattc |
7661426 |
T |
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| Q |
170 |
agctagtcaagggaaagcctccaaagata |
198 |
Q |
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| T |
7661427 |
atctaatcaagggaaaacttccaaagata |
7661455 |
T |
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