View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_19 (Length: 359)
Name: NF15036_low_19
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 190 - 342
Target Start/End: Original strand, 47820920 - 47821073
Alignment:
| Q |
190 |
caaacaagtcttaagtgtgagaaaataatgaattaagcaccacatttatctttcaatnnnnnnnnnnn-gtactaaatttatctttttcttttcaatgta |
288 |
Q |
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| T |
47820920 |
caaacaagtcgtaagtgtgagaaaataatgagttaagcaccacatttatctttcaacaaaaaaacaaaagtactaaatttatctttttcttttcaatgta |
47821019 |
T |
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| Q |
289 |
ttattcgatggcatacttgacaaatctctaaaaacttgttctcggcctaaaaaa |
342 |
Q |
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| T |
47821020 |
ttattcgatggcatacttgacaaatctctaaaaacttgttctcggcctaaaaaa |
47821073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 47820731 - 47820863
Alignment:
| Q |
5 |
aaaagtagtgatatatttcttctctctcgtgtttcttcgctagtttgtggagatgcaaaaaagtgtgggtcccagcccattttaatatgtagtctcactt |
104 |
Q |
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| T |
47820731 |
aaaagtagtgatatattttatctctctcgtgtttcttcgttagtttgtggagatgcaaaaaggtgtgggtctcagcccattttaatccgtcgtctcactt |
47820830 |
T |
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| Q |
105 |
tctctgatgttccaaactaaagaaagaaagcat |
137 |
Q |
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| T |
47820831 |
tctctgatgttccaaactgaagaaagaaagcat |
47820863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 41318953 - 41319089
Alignment:
| Q |
1 |
atggaaaagtagtgatatatttcttctctctcgtgtttcttcgctagtttgtggagatgcaaaaaagtgtgggtcccagcccattttaatatgtagtctc |
100 |
Q |
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| T |
41318953 |
atggaaaagtagtgatatttttcttctctctcgtgtttcttcgctagttagaggagatgcaaaaaggtgtgggtcccagcccatttttatctgtcgtctc |
41319052 |
T |
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| Q |
101 |
actttctctgatgttccaaactaaagaaagaaagcat |
137 |
Q |
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| T |
41319053 |
actttctctgatgcaccagactgaagaaagaatgcat |
41319089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 42561289 - 42561206
Alignment:
| Q |
4 |
gaaaagtagtgatatatttcttctctctcgtgtttcttcgctagtttgtggagatgcaaaaaa-gtgtgggtcccagcccattt |
86 |
Q |
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| T |
42561289 |
gaaaagtagtgatattatttatctctctcgtgtttctctgctgttttgaggagatgcaaaaaaggtgtgggtcccagccaattt |
42561206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 18604436 - 18604523
Alignment:
| Q |
1 |
atggaaaagtagtgatatatttcttctctctcgtgtttcttcgctagtttgtggagatgcaaaaaa--gtgtgggtcccagcccattt |
86 |
Q |
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| T |
18604436 |
atggaaaagtagtgatattatttatctctcttatgtttctatgctgttttgaggagatgcaaaaaaaggtgtgggtcccagccaattt |
18604523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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