View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_2 (Length: 599)
Name: NF15036_low_2
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Complemental strand, 42894313 - 42893881
Alignment:
| Q |
12 |
atactactattaatgataatattcctagctcttagaaaaacagaggtttgaaacagagtactctgtttctaactctgttattactctaactcttcttatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894313 |
atactactattaatgataatattcctagctcttagaaaaacagaggtttgaaacagagtactctgtttctaactctgttattactctaactcttcttatt |
42894214 |
T |
|
| Q |
112 |
gttgttgttctcagcgttgagaaaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacga |
211 |
Q |
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| T |
42894213 |
gttgttgttctcagcgttgagaaaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacga |
42894114 |
T |
|
| Q |
212 |
ggacaacctactaacagcatggaggttgcttcagggctgcttgatccattctcagatgaaacacatgaactcggcggcgacaccgacgctgatcgtgttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894113 |
ggacaacctactaacagcatggaggttgcttcagggctgcttgatccattctcagatgaaacacatgaactcggcggcgacaccgacgctgatcgtgttg |
42894014 |
T |
|
| Q |
312 |
gtgatgattccattcttctgttcacccttggtggtgacaaattcagcttcaaatctagctttggcccacttccgtttcttctactcatcttcttcctctg |
411 |
Q |
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| T |
42894013 |
gtgatgattccattcttctgttcacccttggtggtgacaaattcagcttcaaatctagctttggcccacttccgtttcttctactcatcttcttcctctg |
42893914 |
T |
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| Q |
412 |
ttttcctctgtcttctacaaaatacataataat |
444 |
Q |
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| T |
42893913 |
ttttcctctgttttctacaaaatacataataat |
42893881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 536 - 587
Target Start/End: Complemental strand, 42893792 - 42893741
Alignment:
| Q |
536 |
tattcatgattactcaccgagttttttggatatagaagagaaaagaaggaag |
587 |
Q |
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| T |
42893792 |
tattcatgattactcaccgagttttttggatatagaagagaaaagaaggaag |
42893741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 25583631 - 25583747
Alignment:
| Q |
134 |
aaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatgg |
233 |
Q |
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|||||||| ||||| ||||| | |||||| || || |||||||||| ||||| ||||| |||||||| ||||||||||||||||| || || | ||||| |
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| T |
25583631 |
aaatcaagtaaaacagtgcttttacatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatgg |
25583730 |
T |
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| Q |
234 |
aggttgcttcagggctg |
250 |
Q |
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| || ||||| |||||| |
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| T |
25583731 |
aagtggcttctgggctg |
25583747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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