View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_20 (Length: 357)
Name: NF15036_low_20
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 53057581 - 53057255
Alignment:
| Q |
20 |
atatgacctctctcataaattttttcactatgattcccccacataactttaggcctcacctcgtgttggattttctgaggccagagttgcagatgaatta |
119 |
Q |
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| T |
53057581 |
atatgacctctctcataaattttttcactgtgattcccccacataactttaggcctcacctcgtgttggattttctgaggccagagttgcagatgaatta |
53057482 |
T |
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| Q |
120 |
agtactactgttaagggctttatggtcggtactgcctgccactgctgctgtcatcatataatcatagactgacatgttagttggtttcattgttgtctaa |
219 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
53057481 |
agtactactgttaagggctttatggtaggtactgcctgccactgctgctgtcatcatataatcataaactgacatgttagttggtttcattgttgcctaa |
53057382 |
T |
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| Q |
220 |
atctattgttcatgttacatcctacttcaattttcatgtcaatgttttaaaacagaccgaatcggccagttctaccaattgaaccgaaaactggccaatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53057381 |
atctattgttcatgttacatcctacttcaattttcatgtcaatgttttaaaacagaccgaatcggccagttctaccaattgaaccgaaaactggccaatt |
53057282 |
T |
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| Q |
320 |
cactggttggtggttggtttgattcat |
346 |
Q |
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||||||||||||||||||||||||||| |
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| T |
53057281 |
cactggttggtggttggtttgattcat |
53057255 |
T |
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