View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_22 (Length: 349)
Name: NF15036_low_22
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 157 - 336
Target Start/End: Complemental strand, 20097725 - 20097546
Alignment:
| Q |
157 |
aaagaatcactcccataaattttcccacacatcttcttctggaacaaatgtaggtggtggacgtgcaaatctcatacgctttccacccattataatggca |
256 |
Q |
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| T |
20097725 |
aaagaatcactcccataaattttcccacacatcttcttctagaacaaatgtaggtggcggacgtgcaaatctcatacgctttccacccattataatggca |
20097626 |
T |
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| Q |
257 |
cgtgggtcagaaaataagtgataccattcttcttctatttcttctaagctataatctggatgtccaatcatattagatct |
336 |
Q |
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| T |
20097625 |
cgtgggtcagaaaataagtgataccattcttcttctatttcttctaagctataatctggatgtccaatcatattagatct |
20097546 |
T |
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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 20116300 - 20116229
Alignment:
| Q |
190 |
ttcttctggaacaaatgtaggtggtggacgtgcaaatctcatacgctttccacccattataatggcacgtgg |
261 |
Q |
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|||||| ||| | |||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
20116300 |
ttcttccggatctaatgtaggcggcggacgtccaaatcttctacgctttccacccattataatggcacgtgg |
20116229 |
T |
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