View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_low_23 (Length: 348)

Name: NF15036_low_23
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_low_23
NF15036_low_23
[»] chr3 (25 HSPs)
chr3 (161-305)||(35610821-35610966)
chr3 (161-248)||(39091329-39091416)
chr3 (159-242)||(27825691-27825773)
chr3 (160-242)||(33785847-33785928)
chr3 (168-241)||(19439528-19439601)
chr3 (247-305)||(447158-447216)
chr3 (254-298)||(24595236-24595280)
chr3 (247-293)||(20871350-20871396)
chr3 (161-242)||(8504202-8504282)
chr3 (247-296)||(27462140-27462189)
chr3 (254-297)||(51308823-51308866)
chr3 (124-179)||(52737792-52737847)
chr3 (247-293)||(20868712-20868758)
chr3 (318-348)||(5047426-5047456)
chr3 (310-348)||(8128145-8128183)
chr3 (128-174)||(20868834-20868880)
chr3 (318-348)||(38640393-38640423)
chr3 (319-348)||(9268570-9268599)
chr3 (319-348)||(42345441-42345470)
chr3 (128-181)||(51306479-51306532)
chr3 (320-348)||(6019657-6019685)
chr3 (320-348)||(19271617-19271645)
chr3 (320-348)||(34519875-34519903)
chr3 (320-348)||(48628144-48628172)
chr3 (320-348)||(54014555-54014583)
[»] chr8 (24 HSPs)
chr8 (124-305)||(4676154-4676335)
chr8 (161-305)||(4678099-4678243)
chr8 (128-242)||(26174323-26174437)
chr8 (161-252)||(11080221-11080312)
chr8 (128-224)||(7277716-7277812)
chr8 (248-300)||(31909187-31909238)
chr8 (253-293)||(12062802-12062842)
chr8 (254-298)||(35416184-35416228)
chr8 (167-252)||(37892-37976)
chr8 (188-242)||(26175468-26175522)
chr8 (317-348)||(3260867-3260898)
chr8 (318-348)||(116613-116643)
chr8 (318-348)||(4099640-4099670)
chr8 (319-348)||(12317528-12317557)
chr8 (319-348)||(43723660-43723689)
chr8 (320-348)||(1552734-1552762)
chr8 (320-348)||(7504506-7504534)
chr8 (320-348)||(10761187-10761215)
chr8 (320-348)||(13199323-13199351)
chr8 (320-348)||(19391632-19391660)
chr8 (320-348)||(23352259-23352287)
chr8 (320-348)||(27418171-27418199)
chr8 (320-348)||(28907684-28907712)
chr8 (320-348)||(28908739-28908767)
[»] chr5 (24 HSPs)
chr5 (160-305)||(39040538-39040683)
chr5 (124-252)||(35309110-35309238)
chr5 (163-252)||(31185993-31186080)
chr5 (161-242)||(27405306-27405386)
chr5 (161-250)||(35304676-35304765)
chr5 (161-242)||(25213827-25213907)
chr5 (161-242)||(25277977-25278057)
chr5 (161-252)||(43233871-43233963)
chr5 (128-200)||(21254247-21254319)
chr5 (253-305)||(18587463-18587515)
chr5 (317-348)||(20884028-20884059)
chr5 (318-348)||(16868019-16868049)
chr5 (318-348)||(41825040-41825070)
chr5 (319-348)||(11762245-11762274)
chr5 (320-348)||(13006679-13006707)
chr5 (320-348)||(13078698-13078726)
chr5 (320-348)||(22563265-22563293)
chr5 (320-348)||(22833660-22833688)
chr5 (255-299)||(27172922-27172965)
chr5 (320-348)||(27829953-27829981)
chr5 (320-348)||(29690724-29690752)
chr5 (320-348)||(29989462-29989490)
chr5 (320-348)||(38031954-38031982)
chr5 (320-348)||(39987133-39987161)
[»] scaffold0263 (1 HSPs)
scaffold0263 (161-251)||(22958-23048)
[»] chr2 (18 HSPs)
chr2 (153-252)||(36316276-36316375)
chr2 (161-252)||(6016847-6016936)
chr2 (168-242)||(12015132-12015206)
chr2 (124-224)||(24038338-24038438)
chr2 (247-299)||(26608095-26608147)
chr2 (317-348)||(42631773-42631804)
chr2 (318-348)||(36202116-36202146)
chr2 (319-348)||(2077041-2077070)
chr2 (319-348)||(10246953-10246982)
chr2 (319-348)||(43440470-43440499)
chr2 (320-348)||(2077302-2077330)
chr2 (320-348)||(5513742-5513770)
chr2 (320-348)||(5529183-5529211)
chr2 (320-348)||(8224387-8224415)
chr2 (320-348)||(8224647-8224675)
chr2 (320-348)||(20962303-20962331)
chr2 (320-348)||(27926931-27926959)
chr2 (320-348)||(39163821-39163849)
[»] chr7 (22 HSPs)
chr7 (161-252)||(7737357-7737449)
chr7 (161-242)||(35130603-35130683)
chr7 (124-237)||(36647450-36647563)
chr7 (160-242)||(40772870-40772952)
chr7 (161-242)||(48821855-48821936)
chr7 (124-223)||(41830276-41830375)
chr7 (116-181)||(34510814-34510880)
chr7 (316-348)||(17358263-17358295)
chr7 (250-305)||(26389198-26389252)
chr7 (160-242)||(41832665-41832745)
chr7 (255-305)||(2577004-2577053)
chr7 (319-348)||(4698934-4698963)
chr7 (319-348)||(28311104-28311133)
chr7 (320-348)||(4651633-4651661)
chr7 (320-348)||(9556835-9556863)
chr7 (320-348)||(11666754-11666782)
chr7 (320-348)||(11685295-11685323)
chr7 (320-348)||(16274467-16274495)
chr7 (320-348)||(30165472-30165500)
chr7 (320-348)||(31079108-31079136)
chr7 (320-348)||(41745087-41745115)
chr7 (320-348)||(43989042-43989070)
[»] chr4 (15 HSPs)
chr4 (161-242)||(27510483-27510564)
chr4 (161-242)||(13436434-13436514)
chr4 (247-298)||(55849508-55849559)
chr4 (316-348)||(19675868-19675900)
chr4 (318-348)||(6458182-6458212)
chr4 (306-348)||(8652865-8652907)
chr4 (306-348)||(8664672-8664714)
chr4 (318-348)||(23944967-23944997)
chr4 (318-348)||(54442242-54442272)
chr4 (318-348)||(54554142-54554172)
chr4 (132-174)||(55851963-55852005)
chr4 (319-348)||(6457405-6457434)
chr4 (161-241)||(11001295-11001373)
chr4 (316-348)||(12294622-12294654)
chr4 (320-348)||(39701997-39702025)
[»] chr1 (15 HSPs)
chr1 (161-252)||(41418133-41418223)
chr1 (127-242)||(9908147-9908260)
chr1 (161-242)||(9905790-9905869)
chr1 (247-298)||(20225579-20225630)
chr1 (247-305)||(16385587-16385644)
chr1 (121-242)||(18705668-18705787)
chr1 (317-348)||(1613852-1613883)
chr1 (319-348)||(163364-163393)
chr1 (319-348)||(7702100-7702129)
chr1 (320-348)||(3787237-3787265)
chr1 (320-348)||(11586488-11586516)
chr1 (320-348)||(13769901-13769929)
chr1 (320-348)||(16290618-16290646)
chr1 (116-172)||(20226775-20226831)
chr1 (320-348)||(45323446-45323474)
[»] chr6 (22 HSPs)
chr6 (161-242)||(6860169-6860250)
chr6 (164-252)||(9231563-9231651)
chr6 (247-298)||(9664720-9664771)
chr6 (159-242)||(14618732-14618816)
chr6 (188-242)||(10774543-10774597)
chr6 (253-298)||(787298-787343)
chr6 (119-223)||(8655785-8655889)
chr6 (124-202)||(23343905-23343979)
chr6 (163-242)||(29427400-29427477)
chr6 (128-195)||(6825475-6825542)
chr6 (124-174)||(787424-787474)
chr6 (319-348)||(14597352-14597381)
chr6 (311-348)||(19591559-19591596)
chr6 (319-348)||(22795243-22795272)
chr6 (319-348)||(27660371-27660400)
chr6 (320-348)||(2965831-2965859)
chr6 (320-348)||(9218480-9218508)
chr6 (320-348)||(11536732-11536760)
chr6 (320-348)||(11562242-11562270)
chr6 (320-348)||(16840295-16840323)
chr6 (320-348)||(26242539-26242567)
chr6 (320-348)||(28228600-28228628)
[»] scaffold0001 (1 HSPs)
scaffold0001 (128-174)||(146687-146733)
[»] scaffold0235 (1 HSPs)
scaffold0235 (317-348)||(24186-24217)
[»] scaffold0098 (1 HSPs)
scaffold0098 (309-348)||(4219-4258)
[»] scaffold0037 (1 HSPs)
scaffold0037 (318-348)||(96703-96733)
[»] scaffold0017 (1 HSPs)
scaffold0017 (189-242)||(183027-183080)
[»] scaffold0090 (1 HSPs)
scaffold0090 (320-348)||(15364-15392)
[»] scaffold0038 (1 HSPs)
scaffold0038 (320-348)||(29098-29126)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 35610966 - 35610821
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattac-aatgataagagaggtacaa 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||| ||||| |||||||||||| ||||||    
T  35610966 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagaatacttctattgatgataaaattgaaaattacaaatgataagagatgtacaa 35610867  T
Q  260 atgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35610866 atgagtcaaccttgtgacttatatagtaactaaactagtaccctaa 35610821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 39091329 - 39091416
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataa 248  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  ||||||||||||||||||||    
T  39091329 tgttatgaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgatagaagtgaatattacaatgataa 39091416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 27825691 - 27825773
Alignment:
Q  159 catgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||    
T  27825691 catgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgataa-agtgaatattacaa 27825773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 33785928 - 33785847
Alignment:
Q  160 atgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||| |||||||| |||||    
T  33785928 atgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaacaatctttgtattgatgataa-agtgaatagtacaa 33785847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 19439601 - 19439528
Alignment:
Q  168 aaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattaca 241  Q
    ||||||||||||||| ||||||||||||||||||||||| | | ||| |||||||||||| |||||||||||||    
T  19439601 aaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattaca 19439528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 447158 - 447216
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||    
T  447158 aagagaggtacaaatgagtcaactttgtgacttctatagtatctaaactagtaccctaa 447216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 24595280 - 24595236
Alignment:
Q  254 gtacaaatgagtcaaccttgtgacttatatagtaactaaactagt 298  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  24595280 gtacaaatgagtcaaccatgtgacttatatagtaactaaactagt 24595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 20871396 - 20871350
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaa 293  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  20871396 aagataggtacaaatgagtcaaccatgtgacttatatagtaactaaa 20871350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 8504202 - 8504282
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||| ||||| |||||  ||||||||||||||||||||||| |   |||||||||||||||| ||||||||| ||||    
T  8504202 tgttaggaatcatgaaatccatggaaggaatgagagaaaactcaaataagctttctattgatgataa-agtgaatatcacaa 8504282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 27462189 - 27462140
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaacta 296  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  27462189 aagataggtacaaatgagtcaaccatatgacttatatagtaactaaacta 27462140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 51308866 - 51308823
Alignment:
Q  254 gtacaaatgagtcaaccttgtgacttatatagtaactaaactag 297  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  51308866 gtacaaatgagtcaaccatgtgacttatatagtaactacactag 51308823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 52737792 - 52737847
Alignment:
Q  124 atccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatc 179  Q
    ||||||||||||||||||||   ||||| ||||| |||||||||||||||||||||    
T  52737792 atccttcaaggtggataccagatttgctctgataccatgttaggaaacatgatatc 52737847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 20868758 - 20868712
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaa 293  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||||    
T  20868758 aagataggtacaaataagtcaaccatgtgacttatatagtaactaaa 20868712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 5047456 - 5047426
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  5047456 aatagggttaatagtgtttttcacccctgta 5047426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 8128183 - 8128145
Alignment:
Q  310 ttattcttaatagggttaatagtgtttttcacccctgta 348  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  8128183 ttatttttaaaagggttaatagtgtttttcacccctgta 8128145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 20868880 - 20868834
Alignment:
Q  128 ttcaaggtggataccaatcttgctttgatagcatgttaggaaacatg 174  Q
    ||||||||||||||||||| |||| ||||| |||||| |||||||||    
T  20868880 ttcaaggtggataccaatcatgctctgataccatgttgggaaacatg 20868834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 38640393 - 38640423
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  38640393 aatagggttaatagtgtttttcacccctgta 38640423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 9268570 - 9268599
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  9268570 atagggttaatagtgtttttcacccctgta 9268599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 42345470 - 42345441
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  42345470 atagggttaatagtgtttttcacccctgta 42345441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 51306532 - 51306479
Alignment:
Q  128 ttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatcca 181  Q
    ||||||||||||||||||| |||| ||||| ||||||  ||||||||| |||||    
T  51306532 ttcaaggtggataccaatcatgctctgataccatgttgagaaacatgacatcca 51306479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 6019685 - 6019657
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  6019685 tagggttaatagtgtttttcacccctgta 6019657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 19271617 - 19271645
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  19271617 tagggttaatagtgtttttcacccctgta 19271645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 34519875 - 34519903
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  34519875 tagggttaatagtgtttttcacccctgta 34519903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 48628144 - 48628172
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  48628144 tagggttaatagtgtttttcacccctgta 48628172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 54014555 - 54014583
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  54014555 tagggttaatagtgtttttcacccctgta 54014583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 124 - 305
Target Start/End: Complemental strand, 4676335 - 4676154
Alignment:
Q  124 atccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatg 223  Q
    ||||||||||||||||||||   | ||| ||||| ||| |||||||||||||||||||  ||||||||||||||||||| | ||| ||||||||||||||    
T  4676335 atccttcaaggtggataccaggttagctctgataccatattaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatg 4676237  T
Q  224 ataatagtgaatattacaatgataagagaggtac-aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    |||| ||||||||||||||||||||||||  | | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4676236 ataaaagtgaatattacaatgataagagatatccaaaatgagtcaaccctgtgacttatatagtaactaaactagtactctaa 4676154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 4678243 - 4678099
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataagagaggtac-aa 259  Q
    |||||||||||||||||||||  ||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||  | | ||    
T  4678243 tgttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaatgataagagatatccaaa 4678145  T
Q  260 atgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4678144 atgagtcaaccttgtgacttatatagtaactaaactagtactctaa 4678099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 26174437 - 26174323
Alignment:
Q  128 ttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataa 227  Q
    ||||||||||||||||   ||| | ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| | | ||| ||||||||||||    
T  26174437 ttcaaggtggataccatatttgttctgataccatgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataa 26174338  T
Q  228 tagtgaatattacaa 242  Q
     ||||||||||||||    
T  26174337 aagtgaatattacaa 26174323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 11080312 - 11080221
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataagaga 252  Q
    |||||||||||||||||||||||||| |||||||| |||||||  ||| |||||||||| ||||||| ||||||||||| ||||||||||||    
T  11080312 tgttaggaaacatgatatccaatgaaagaatgagaaaaaactcggagaatatttctattaatgataaaagtgaatattaaaatgataagaga 11080221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 7277716 - 7277812
Alignment:
Q  128 ttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatga 224  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||  ||| ||| ||||||||||| | | | | |||||||||||||    
T  7277716 ttcaaggtggataccaatcatgctctgataccatgttaggaaacatggtatccatggaaagaaggagagaaaactaagaaactctttctattgatga 7277812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 31909187 - 31909238
Alignment:
Q  248 agagaggtacaaatgagtcaaccttgtgacttatatagtaactaaactagtac 300  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  31909187 agagaggtacaaatgagtcaac-ttgtgacttatatagtgactaaactagtac 31909238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 12062842 - 12062802
Alignment:
Q  253 ggtacaaatgagtcaaccttgtgacttatatagtaactaaa 293  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  12062842 ggtacaaatgagtcaaccatgtgacttatatagtaactaaa 12062802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 35416184 - 35416228
Alignment:
Q  254 gtacaaatgagtcaaccttgtgacttatatagtaactaaactagt 298  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||    
T  35416184 gtacaaatgagtcaaccatgtgacttatatagtcactaaactagt 35416228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 37976 - 37892
Alignment:
Q  167 gaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattac-aatgataagaga 252  Q
    |||| ||||||||||||||||||||||||||||| |  ||||   |||||||| ||||||| ||||||| |||| ||||||||||||    
T  37976 gaaatatgatatccaatgaaggaatgagagaaaatt--aagagactttctatttatgataaaagtgaatgttacaaatgataagaga 37892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 26175522 - 26175468
Alignment:
Q  188 gaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||    
T  26175522 gaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 26175468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 348
Target Start/End: Original strand, 3260867 - 3260898
Alignment:
Q  317 taatagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||||    
T  3260867 taatagggttaatagtgtttttcacccctgta 3260898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 116613 - 116643
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  116613 aatagggttaatagtgtttttcacccctgta 116643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 4099640 - 4099670
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  4099640 aatagggttaatagtgtttttcacccctgta 4099670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 12317528 - 12317557
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  12317528 atagggttaatagtgtttttcacccctgta 12317557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 43723689 - 43723660
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  43723689 atagggttaatagtgtttttcacccctgta 43723660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 1552734 - 1552762
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  1552734 tagggttaatagtgtttttcacccctgta 1552762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 7504506 - 7504534
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  7504506 tagggttaatagtgtttttcacccctgta 7504534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 10761215 - 10761187
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  10761215 tagggttaatagtgtttttcacccctgta 10761187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 13199351 - 13199323
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  13199351 tagggttaatagtgtttttcacccctgta 13199323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 19391632 - 19391660
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  19391632 tagggttaatagtgtttttcacccctgta 19391660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 23352287 - 23352259
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  23352287 tagggttaatagtgtttttcacccctgta 23352259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 27418199 - 27418171
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  27418199 tagggttaatagtgtttttcacccctgta 27418171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 28907684 - 28907712
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  28907684 tagggttaatagtgtttttcacccctgta 28907712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 28908767 - 28908739
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  28908767 tagggttaatagtgtttttcacccctgta 28908739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 160 - 305
Target Start/End: Original strand, 39040538 - 39040683
Alignment:
Q  160 atgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataagagaggtac-a 258  Q
    ||||||||||||||||||||||   |||||||||||||||||| | ||| | |||||||||||||||| ||||||||||||||||||||||||  | | |    
T  39040538 atgttaggaaacatgatatccaca-aaggaatgagagaaaactaagagaatgtttctattgatgataaaagtgaatattacaatgataagagatattcaa 39040636  T
Q  259 aatgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39040637 aatgagtcaaccttgtgacttatatagtaactaaactagtactctaa 39040683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 124 - 252
Target Start/End: Original strand, 35309110 - 35309238
Alignment:
Q  124 atccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatg 223  Q
    ||||||||||||||||||||   | ||| ||||| ||||||||||||||||||||||||||||||||||||| |||  ||| ||| ||||||||||||||    
T  35309110 atccttcaaggtggataccagattagctctgataccatgttaggaaacatgatatccaatgaaggaatgagaaaaatttcatagaatatttctattgatg 35309209  T
Q  224 ataatagtgaatattacaatgataagaga 252  Q
    |||| ||| ||||||||||||||||||||    
T  35309210 ataaaagtaaatattacaatgataagaga 35309238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 31185993 - 31186080
Alignment:
Q  163 ttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataagaga 252  Q
    |||||||||||||||||||| ||||||||||||||||||||  | | |||||||||||||||||| ||||||||||||||||||| ||||    
T  31185993 ttaggaaacatgatatccaacgaaggaatgagagaaaactc--ataatatttctattgatgataaaagtgaatattacaatgatatgaga 31186080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 27405306 - 27405386
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||| ||| ||||||||||||||    
T  27405306 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatggtaa-agtgaatattacaa 27405386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 35304676 - 35304765
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataaga 250  Q
    |||||||||||||||||| |||||||| |||||||  || |||| ||| |||||||||||||||||| ||||||||||| ||||||||||    
T  35304676 tgttaggaaacatgatattcaatgaagaaatgagaagaatctcagagaatatttctattgatgataaaagtgaatattataatgataaga 35304765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 25213907 - 25213827
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| | | ||| |||||||||||| ||||||||||||||    
T  25213907 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgataa-agtgaatattacaa 25213827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 25278057 - 25277977
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| | | ||| |||||||||||| ||||||||||||||    
T  25278057 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgataa-agtgaatattacaa 25277977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 43233963 - 43233871
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattac-aatgataagaga 252  Q
    ||||||||||||||  |||||  ||||||||||||||||||||||||| | ||||||||||||||||   |||||||||| ||||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatgataaagttgaatattacaaatgataagaga 43233871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 21254319 - 21254247
Alignment:
Q  128 ttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaa 200  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||||  |||||  ||||||| |||||||||    
T  21254319 ttcaaggtggataccaatcatgctatgataccatgttaggaaacatggcatccatggaaggaaggagagaaaa 21254247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 18587463 - 18587515
Alignment:
Q  253 ggtacaaatgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||| ||||    
T  18587463 ggtacaaatgaatcaaccttgtgacttatatagtaacctaactagtaccctaa 18587515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 348
Target Start/End: Original strand, 20884028 - 20884059
Alignment:
Q  317 taatagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||||    
T  20884028 taatagggttaatagtgtttttcacccctgta 20884059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 16868049 - 16868019
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  16868049 aatagggttaatagtgtttttcacccctgta 16868019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 41825040 - 41825070
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  41825040 aatagggttaatagtgtttttcacccctgta 41825070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 11762245 - 11762274
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  11762245 atagggttaatagtgtttttcacccctgta 11762274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 13006707 - 13006679
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  13006707 tagggttaatagtgtttttcacccctgta 13006679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 13078726 - 13078698
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  13078726 tagggttaatagtgtttttcacccctgta 13078698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 22563293 - 22563265
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  22563293 tagggttaatagtgtttttcacccctgta 22563265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 22833688 - 22833660
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  22833688 tagggttaatagtgtttttcacccctgta 22833660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 27172922 - 27172965
Alignment:
Q  255 tacaaatgagtcaaccttgtgacttatatagtaactaaactagta 299  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||    
T  27172922 tacaaatgagtca-cctaatgacttatatagtaactaaactagta 27172965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 27829953 - 27829981
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  27829953 tagggttaatagtgtttttcacccctgta 27829981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 29690752 - 29690724
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  29690752 tagggttaatagtgtttttcacccctgta 29690724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 29989462 - 29989490
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  29989462 tagggttaatagtgtttttcacccctgta 29989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 38031954 - 38031982
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  38031954 tagggttaatagtgtttttcacccctgta 38031982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 39987133 - 39987161
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  39987133 tagggttaatagtgtttttcacccctgta 39987161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 23048 - 22958
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataagag 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  23048 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatattacaatgataagag 22958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 36316276 - 36316375
Alignment:
Q  153 tgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataagaga 252  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||| ||||    
T  36316276 tgataccatattaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatgataaaagtgaatattacaatgatatgaga 36316375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 6016847 - 6016936
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaatgataagaga 252  Q
    |||||||||||||||||||||||||||||||| || |||||||  ||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  6016847 tgttaggaaacatgatatccaatgaaggaatgggaaaaaactc--agaatatttctattgatgataaaagtgaatgttacaatgataagaga 6016936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 12015206 - 12015132
Alignment:
Q  168 aaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||||||||| ||| ||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||    
T  12015206 aaacatgatatccaaggaaagaatgagagaaaactcaaataatatttgtattgatgataaaagtgaatattacaa 12015132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 24038438 - 24038338
Alignment:
Q  124 atccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatg 223  Q
    ||||||||||||||||||||| |  ||| ||||| |||||||| |||||||  |||||  ||||||||||||||||||| | | | | ||||||||||||    
T  24038438 atccttcaaggtggataccaaccaggctctgataccatgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatg 24038339  T
Q  224 a 224  Q
    |    
T  24038338 a 24038338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 26608095 - 26608147
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaactagta 299  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  26608095 aagataggtacagatgagtcaaccttgtgacttatatagtaactgaactagta 26608147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 348
Target Start/End: Original strand, 42631773 - 42631804
Alignment:
Q  317 taatagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||||    
T  42631773 taatagggttaatagtgtttttcacccctgta 42631804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 36202116 - 36202146
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  36202116 aatagggttaatagtgtttttcacccctgta 36202146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 2077041 - 2077070
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  2077041 atagggttaatagtgtttttcacccctgta 2077070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 10246982 - 10246953
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  10246982 atagggttaatagtgtttttcacccctgta 10246953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 43440470 - 43440499
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  43440470 atagggttaatagtgtttttcacccctgta 43440499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 2077330 - 2077302
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  2077330 tagggttaatagtgtttttcacccctgta 2077302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 5513770 - 5513742
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  5513770 tagggttaatagtgtttttcacccctgta 5513742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 5529211 - 5529183
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  5529211 tagggttaatagtgtttttcacccctgta 5529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 8224387 - 8224415
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  8224387 tagggttaatagtgtttttcacccctgta 8224415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 8224675 - 8224647
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  8224675 tagggttaatagtgtttttcacccctgta 8224647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 20962331 - 20962303
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  20962331 tagggttaatagtgtttttcacccctgta 20962303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 27926931 - 27926959
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  27926931 tagggttaatagtgtttttcacccctgta 27926959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 39163821 - 39163849
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  39163821 tagggttaatagtgtttttcacccctgta 39163849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 7737449 - 7737357
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattac-aatgataagaga 252  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||| |||||||||||| ||||||||||||    
T  7737449 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgataagaga 7737357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 35130683 - 35130603
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||    
T  35130683 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgataa-agtgaatattacaa 35130603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 36647450 - 36647563
Alignment:
Q  124 atccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatg 223  Q
    |||||||||| || ||||||   | ||| ||||| ||| |||| ||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||    
T  36647450 atccttcaagatgaataccagattagctctgataccatattagaaaacatgatatccaatgaaagaatgagagaaaacttagagaatatttctattgatg 36647549  T
Q  224 ataatagtgaatat 237  Q
    |||| | |||||||    
T  36647550 ataaaaatgaatat 36647563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 40772870 - 40772952
Alignment:
Q  160 atgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||| |||||| |||| ||| ||||||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||    
T  40772870 atgttagtaaacatcatatacaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 40772952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 48821855 - 48821936
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||| |||||||||||||||  |||| |||||||||||||||| ||| | ||||||||||||||||  |||||||||||||    
T  48821855 tgttatgaaacatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaa 48821936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 41830375 - 41830276
Alignment:
Q  124 atccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatg 223  Q
    |||||||||||||||||||||  | ||| | ||| ||||||||||||||||  |||||  ||||||||||||||||||| | | | | ||||||||||||    
T  41830375 atccttcaaggtggataccaagttagctctaataccatgttaggaaacatgtcatccatggaaggaatgagagaaaactaagaaactctttctattgatg 41830276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 34510880 - 34510814
Alignment:
Q  116 agcggaaaat-ccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatcca 181  Q
    |||||||||| ||||||||||||||||||   | ||| ||||| |||||||||||||||||||||||    
T  34510880 agcggaaaattccttcaaggtggataccagattagctctgataccatgttaggaaacatgatatcca 34510814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 17358295 - 17358263
Alignment:
Q  316 ttaatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||||    
T  17358295 ttaatagggttaatagtgtttttcacccctgta 17358263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 26389252 - 26389198
Alignment:
Q  250 agaggtacaaatgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    |||| |||||| |||||||| |||||||||||||||| ||||||||||||| ||||    
T  26389252 agagatacaaaagagtcaac-ttgtgacttatatagtgactaaactagtacactaa 26389198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 41832745 - 41832665
Alignment:
Q  160 atgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    |||||||||||||||  |||||  ||||||||||||||||||| | | | | ||||||||||||| |||  ||||||||||||    
T  41832745 atgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaat--tgaatattacaa 41832665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 2577053 - 2577004
Alignment:
Q  255 tacaaatgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    ||||||||||||||| |||||||||||||||| |||| |||||||| ||||    
T  2577053 tacaaatgagtcaac-ttgtgacttatatagtgactatactagtaccctaa 2577004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 4698934 - 4698963
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  4698934 atagggttaatagtgtttttcacccctgta 4698963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 28311104 - 28311133
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  28311104 atagggttaatagtgtttttcacccctgta 28311133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 4651661 - 4651633
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  4651661 tagggttaatagtgtttttcacccctgta 4651633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 9556863 - 9556835
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  9556863 tagggttaatagtgtttttcacccctgta 9556835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 11666754 - 11666782
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  11666754 tagggttaatagtgtttttcacccctgta 11666782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 11685323 - 11685295
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  11685323 tagggttaatagtgtttttcacccctgta 11685295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 16274467 - 16274495
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  16274467 tagggttaatagtgtttttcacccctgta 16274495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 30165472 - 30165500
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  30165472 tagggttaatagtgtttttcacccctgta 30165500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 31079108 - 31079136
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  31079108 tagggttaatagtgtttttcacccctgta 31079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 41745087 - 41745115
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  41745087 tagggttaatagtgtttttcacccctgta 41745115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 43989042 - 43989070
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  43989042 tagggttaatagtgtttttcacccctgta 43989070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 27510483 - 27510564
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||| ||||||||||||||    
T  27510483 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaa 27510564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 13436434 - 13436514
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||||||||||||  ||  ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  13436434 tgttaggaaacatgatatttaagaaaggaatgagagaaaactcaa-gattatttttattgatgataaaagtgaatattacaa 13436514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 55849508 - 55849559
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaactagt 298  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  55849508 aagataggtacaaatgagtcaaccatgtgacttatatagtaactgaactagt 55849559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 19675900 - 19675868
Alignment:
Q  316 ttaatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||||    
T  19675900 ttaatagggttaatagtgtttttcacccctgta 19675868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 6458212 - 6458182
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  6458212 aatagggttaatagtgtttttcacccctgta 6458182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 8652907 - 8652865
Alignment:
Q  306 atcattattcttaatagggttaatagtgtttttcacccctgta 348  Q
    ||||||||| || | ||||||||||||||||||||||||||||    
T  8652907 atcattattttttaaagggttaatagtgtttttcacccctgta 8652865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 8664714 - 8664672
Alignment:
Q  306 atcattattcttaatagggttaatagtgtttttcacccctgta 348  Q
    ||||||||| || | ||||||||||||||||||||||||||||    
T  8664714 atcattattttttaaagggttaatagtgtttttcacccctgta 8664672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 23944997 - 23944967
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  23944997 aatagggttaatagtgtttttcacccctgta 23944967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 54442272 - 54442242
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  54442272 aatagggttaatagtgtttttcacccctgta 54442242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 54554172 - 54554142
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  54554172 aatagggttaatagtgtttttcacccctgta 54554142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 55851963 - 55852005
Alignment:
Q  132 aggtggataccaatcttgctttgatagcatgttaggaaacatg 174  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  55851963 aggtggataccaatcttgctctgatacgatgttaggaaacatg 55852005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 6457405 - 6457434
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  6457405 atagggttaatagtgtttttcacccctgta 6457434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 11001295 - 11001373
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattaca 241  Q
    |||||||||||||||||||||  |||| | ||| |||||||||||  ||  ||| |||||||||||| ||||||| |||||    
T  11001295 tgttaggaaacatgatatccatggaagaactgaaagaaaactcaagaat--tttttattgatgataaaagtgaatgttaca 11001373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 12294654 - 12294622
Alignment:
Q  316 ttaatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||| ||||||||||||||    
T  12294654 ttaatagggttaatagtgattttcacccctgta 12294622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 39701997 - 39702025
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  39701997 tagggttaatagtgtttttcacccctgta 39702025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 41418223 - 41418133
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattac-aatgataagaga 252  Q
    ||||||||||||||||||||||||||||||| ||||||||||  |||||| |||| ||||||||||| |||||||||||| ||||||||||||    
T  41418223 tgttaggaaacatgatatccaatgaaggaattagagaaaact--aagattctttcaattgatgataaaagtgaatattacaaatgataagaga 41418133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 127 - 242
Target Start/End: Original strand, 9908147 - 9908260
Alignment:
Q  127 cttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgata 226  Q
    |||||||||||||||||   | ||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||| | | ||| |||||||||||    
T  9908147 cttcaaggtggataccagattagctctgataccatgttaggaaacatgatatccaa-caaggaatgagagaaaactcaaataatctttgtattgatgata 9908245  T
Q  227 atagtgaatattacaa 242  Q
    | ||||||||||||||    
T  9908246 a-agtgaatattacaa 9908260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 9905790 - 9905869
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||    
T  9905790 tgttaggaaacatgatatccaac-aaggaatgagagaaaactcaaataatctttgtattgatgataa-agtgaatattacaa 9905869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 20225579 - 20225630
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaactagt 298  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  20225579 aagataggtacaaaagagtcaaccatgtgacttatatagtaactaaactagt 20225630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 16385644 - 16385587
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaactagtactctaa 305  Q
    |||||| |||||||||||||||| |||||||||||| ||| ||||||||||||| ||||    
T  16385644 aagagatgtacaaatgagtcaac-ttgtgacttatacagtgactaaactagtaccctaa 16385587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 18705668 - 18705787
Alignment:
Q  121 aaaatccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattg 220  Q
    |||||||||||||||||||||||   | ||| ||||| |||||||| |||||||  |||||   |||||| ||||||||||| | | | | |||||||||    
T  18705668 aaaatccttcaaggtggataccagattagctctgataccatgttagaaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattg 18705767  T
Q  221 atgataatagtgaatattacaa 242  Q
    |||| ||||  |||||||||||    
T  18705768 atgaaaata--gaatattacaa 18705787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 1613883 - 1613852
Alignment:
Q  317 taatagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||||    
T  1613883 taatagggttaatagtgtttttcacccctgta 1613852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 163393 - 163364
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  163393 atagggttaatagtgtttttcacccctgta 163364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 7702100 - 7702129
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  7702100 atagggttaatagtgtttttcacccctgta 7702129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 3787237 - 3787265
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  3787237 tagggttaatagtgtttttcacccctgta 3787265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 11586516 - 11586488
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  11586516 tagggttaatagtgtttttcacccctgta 11586488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 13769929 - 13769901
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  13769929 tagggttaatagtgtttttcacccctgta 13769901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 16290618 - 16290646
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  16290618 tagggttaatagtgtttttcacccctgta 16290646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 20226775 - 20226831
Alignment:
Q  116 agcggaaaatccttcaaggtggataccaatcttgctttgatagcatgttaggaaaca 172  Q
    ||||||||||||||||||| ||||||||   | ||| ||||| ||||||||||||||    
T  20226775 agcggaaaatccttcaaggaggataccagattagctctgataccatgttaggaaaca 20226831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 45323474 - 45323446
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  45323474 tagggttaatagtgtttttcacccctgta 45323446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 6860250 - 6860169
Alignment:
Q  161 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||    
T  6860250 tgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 6860169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 9231651 - 9231563
Alignment:
Q  164 taggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa-tgataagaga 252  Q
    |||||||||||||||||   |||| |||||||||| ||||||||| | |||||||||||||||| |||||||||||||| ||||||||||    
T  9231651 taggaaacatgatatccgtggaag-aatgagagaatactcaaagaatctttctattgatgataaaagtgaatattacaagtgataagaga 9231563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 9664720 - 9664771
Alignment:
Q  247 aagagaggtacaaatgagtcaaccttgtgacttatatagtaactaaactagt 298  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9664720 aagataggtacaaatgagtcaaccatgtgacttatatagtaactaaactagt 9664771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 14618732 - 14618816
Alignment:
Q  159 catgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaa-gattatttctattgatgataatagtgaatattacaa 242  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||  ||  ||| |||||||||||| |||||| |||||||    
T  14618732 catgttagtaaacatgatatccaaggaaggaatgaaagaaaactcaaataatgttttgtattgatgataaaagtgaacattacaa 14618816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 10774543 - 10774597
Alignment:
Q  188 gaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    ||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||    
T  10774543 gaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 10774597  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 787343 - 787298
Alignment:
Q  253 ggtacaaatgagtcaaccttgtgacttatatagtaactaaactagt 298  Q
    |||||||||||||||| | | |||||||||||||||||||||||||    
T  787343 ggtacaaatgagtcaatcatatgacttatatagtaactaaactagt 787298  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 8655785 - 8655889
Alignment:
Q  119 ggaaaatccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctat 218  Q
    ||||||||||||||||||| |||||     ||| ||||| ||||||||||||||||  |||||  ||||||| ||||||||||| | | | | |||||||    
T  8655785 ggaaaatccttcaaggtgggtaccagataagctctgataccatgttaggaaacatggcatccatagaaggaaggagagaaaactaagaaactctttctat 8655884  T
Q  219 tgatg 223  Q
    |||||    
T  8655885 tgatg 8655889  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 23343979 - 23343905
Alignment:
Q  124 atccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgagagaaaact 202  Q
    ||||||||||||||||||||   |  || ||||| ||||||  ||||||| ||||||||||||||||||||||||||||    
T  23343979 atccttcaaggtggataccaggtt--ctctgataccatgtt--gaaacattatatccaatgaaggaatgagagaaaact 23343905  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 29427477 - 29427400
Alignment:
Q  163 ttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    |||| ||||||||||| ||| ||||||||||||||||||| ||| | | ||| |||||  ||||| ||||||||||||||    
T  29427477 ttagtaaacatgatattcaaggaaggaatgagagaaaacttaaataatgtttgtattg--gataaaagtgaatattacaa 29427400  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 6825475 - 6825542
Alignment:
Q  128 ttcaaggtggataccaatcttgctttgatagcatgttaggaaacatgatatccaatgaaggaatgaga 195  Q
    ||||||||||||||||||| |||| | ||| ||||||||||||||||  |||||  ||||||| ||||    
T  6825475 ttcaaggtggataccaatcatgctctaataccatgttaggaaacatggcatccatggaaggaaggaga 6825542  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 787474 - 787424
Alignment:
Q  124 atccttcaaggtggataccaatcttgctttgatagcatgttaggaaacatg 174  Q
    ||||||||||||||||||||   ||||| ||||| ||||||||||||||||    
T  787474 atccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 787424  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 14597381 - 14597352
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  14597381 atagggttaatagtgtttttcacccctgta 14597352  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 19591596 - 19591559
Alignment:
Q  311 tattcttaatagggttaatagtgtttttcacccctgta 348  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  19591596 tattattaaaagggttaatagtgtttttcacccctgta 19591559  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 22795272 - 22795243
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  22795272 atagggttaatagtgtttttcacccctgta 22795243  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 27660371 - 27660400
Alignment:
Q  319 atagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||    
T  27660371 atagggttaatagtgtttttcacccctgta 27660400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 2965859 - 2965831
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  2965859 tagggttaatagtgtttttcacccctgta 2965831  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 9218508 - 9218480
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  9218508 tagggttaatagtgtttttcacccctgta 9218480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 11536732 - 11536760
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  11536732 tagggttaatagtgtttttcacccctgta 11536760  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 11562242 - 11562270
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  11562242 tagggttaatagtgtttttcacccctgta 11562270  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 16840295 - 16840323
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  16840295 tagggttaatagtgtttttcacccctgta 16840323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 26242567 - 26242539
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  26242567 tagggttaatagtgtttttcacccctgta 26242539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 28228600 - 28228628
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  28228600 tagggttaatagtgtttttcacccctgta 28228628  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 146687 - 146733
Alignment:
Q  128 ttcaaggtggataccaatcttgctttgatagcatgttaggaaacatg 174  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  146687 ttcaaggtggataccaatcatgctttgataccatgttaggaaacatg 146733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 348
Target Start/End: Original strand, 24186 - 24217
Alignment:
Q  317 taatagggttaatagtgtttttcacccctgta 348  Q
    ||||||||||||||||||||||||||||||||    
T  24186 taatagggttaatagtgtttttcacccctgta 24217  T

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Target: scaffold0098 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 4258 - 4219
Alignment:
Q  309 attattcttaatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  4258 attattctttttagggttaatagtgtttttcacccctgta 4219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 96733 - 96703
Alignment:
Q  318 aatagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||||    
T  96733 aatagggttaatagtgtttttcacccctgta 96703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 183080 - 183027
Alignment:
Q  189 aatgagagaaaactcaaagattatttctattgatgataatagtgaatattacaa 242  Q
    |||||||||||||||||  | | ||||| |||||||||| ||||||||||||||    
T  183080 aatgagagaaaactcaagtaatctttcttttgatgataaaagtgaatattacaa 183027  T

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Target: scaffold0090 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 15364 - 15392
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  15364 tagggttaatagtgtttttcacccctgta 15392  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 29098 - 29126
Alignment:
Q  320 tagggttaatagtgtttttcacccctgta 348  Q
    |||||||||||||||||||||||||||||    
T  29098 tagggttaatagtgtttttcacccctgta 29126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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