View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_low_25 (Length: 336)

Name: NF15036_low_25
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_low_25
NF15036_low_25
[»] chr8 (2 HSPs)
chr8 (17-299)||(295331-295613)
chr8 (231-264)||(26871046-26871079)
[»] chr5 (1 HSPs)
chr5 (230-299)||(27340868-27340936)
[»] chr4 (3 HSPs)
chr4 (230-299)||(17363229-17363297)
chr4 (230-264)||(51296227-51296261)
chr4 (231-264)||(29384235-29384268)
[»] chr2 (3 HSPs)
chr2 (230-299)||(42665816-42665884)
chr2 (222-259)||(41353540-41353577)
chr2 (230-258)||(42251964-42251992)
[»] scaffold0155 (1 HSPs)
scaffold0155 (226-264)||(3298-3336)
[»] chr7 (1 HSPs)
chr7 (230-264)||(21752657-21752691)
[»] chr6 (1 HSPs)
chr6 (230-264)||(16337108-16337142)
[»] chr3 (3 HSPs)
chr3 (221-259)||(22153854-22153892)
chr3 (228-299)||(43900761-43900831)
chr3 (230-259)||(52727491-52727520)
[»] chr1 (3 HSPs)
chr1 (228-257)||(586896-586925)
chr1 (231-264)||(37690429-37690462)
chr1 (230-299)||(30535990-30536059)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 295331 - 295613
Alignment:
Q  17 ccaagttcaaactacaattaacatagtaacatcatcataggcacctctcttgccacgtcttcctgttttattttatctctctttgcttggtccaaaatta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  295331 ccaagttcaaactacaattaacatagtaacatcatcataggcacctctcttgccacgtcttcctgttttattttatctctctttgcttggtccaaaatta 295430  T
Q  117 aggcatcaaccttagccagatatatacatacatacttgcatcgtacatatttttccctccttatacttggatgaataaatattaggctaaattaaatcag 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  295431 aggcatcaaccttagccagatataaacatacatacttgcatcgtacatattttcccctccttatacttggatgaataaatattaggctaaattaaatcag 295530  T
Q  217 ggtcttttgaaagagagaaatgatatttgtacaatcactttatcacaannnnnnngacaattttctctatcatactcacatta 299  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||       || || ||||||| ||||||||||||||    
T  295531 ggtcttttaaaagtgagaaatgatatttgtacaaccactttatcacaatttttttgataactttctctctcatactcacatta 295613  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 26871046 - 26871079
Alignment:
Q  231 gagaaatgatatttgtacaatcactttatcacaa 264  Q
    ||||||||||||||||||||||||||||| ||||    
T  26871046 gagaaatgatatttgtacaatcactttatgacaa 26871079  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 27340868 - 27340936
Alignment:
Q  230 agagaaatgatatttgtacaatcactttatcacaannnnnnngacaattttctctatcatactcacatta 299  Q
    |||||||||||||||||||||||||||||| | ||       ||||||||||||| ||||||||||||||    
T  27340868 agagaaatgatatttgtacaatcactttattataa-ttttttgacaattttctctctcatactcacatta 27340936  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 17363229 - 17363297
Alignment:
Q  230 agagaaatgatatttgtacaatcactttatcacaannnnnnngacaattttctctatcatactcacatta 299  Q
    |||||||||||||||||||||||||||||| ||||       ||||| ||||||| ||||||||||||||    
T  17363229 agagaaatgatatttgtacaatcactttattacaa-ctttttgacaactttctctctcatactcacatta 17363297  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 51296261 - 51296227
Alignment:
Q  230 agagaaatgatatttgtacaatcactttatcacaa 264  Q
    |||||||||||||||||||||||||||||| ||||    
T  51296261 agagaaatgatatttgtacaatcactttatgacaa 51296227  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 29384268 - 29384235
Alignment:
Q  231 gagaaatgatatttgtacaatcactttatcacaa 264  Q
    ||||||||||||||||||||||||||||| ||||    
T  29384268 gagaaatgatatttgtacaatcactttatgacaa 29384235  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 42665884 - 42665816
Alignment:
Q  230 agagaaatgatatttgtacaatcactttatcacaannnnnnngacaattttctctatcatactcacatta 299  Q
    |||||||||||||||||||||||||||||| ||||       ||||| ||||||| ||||||||||||||    
T  42665884 agagaaatgatatttgtacaatcactttattacaa-ctttttgacaactttctctctcatactcacatta 42665816  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 41353577 - 41353540
Alignment:
Q  222 tttgaaagagagaaatgatatttgtacaatcactttat 259  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41353577 tttgaaaaagagaaatgatatttgtacaatcaatttat 41353540  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 258
Target Start/End: Complemental strand, 42251992 - 42251964
Alignment:
Q  230 agagaaatgatatttgtacaatcacttta 258  Q
    |||||||||||||||||||||||||||||    
T  42251992 agagaaatgatatttgtacaatcacttta 42251964  T

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Target: scaffold0155 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 3336 - 3298
Alignment:
Q  226 aaagagagaaatgatatttgtacaatcactttatcacaa 264  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  3336 aaagagagaaatgatatttgtacaaccactttctcacaa 3298  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 21752657 - 21752691
Alignment:
Q  230 agagaaatgatatttgtacaatcactttatcacaa 264  Q
    |||||||||||||||||||||||||||| ||||||    
T  21752657 agagaaatgatatttgtacaatcactttctcacaa 21752691  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 16337142 - 16337108
Alignment:
Q  230 agagaaatgatatttgtacaatcactttatcacaa 264  Q
    |||||||||||||||||||||||||||||| ||||    
T  16337142 agagaaatgatatttgtacaatcactttatgacaa 16337108  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 22153854 - 22153892
Alignment:
Q  221 ttttgaaagagagaaatgatatttgtacaatcactttat 259  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  22153854 ttttgaaattgagaaatgatatttgtacaatcactttat 22153892  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 43900831 - 43900761
Alignment:
Q  228 agagagaaatgatatttgtacaatcactttatcacaannnnnnngacaattttctctatcatactcacatta 299  Q
    ||||||||||||||||||||||| |||||||| ||||       ||||| ||||||| ||||||||||||||    
T  43900831 agagagaaatgatatttgtacaaccactttattacaa-ctttttgacaactttctctctcatactcacatta 43900761  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 52727520 - 52727491
Alignment:
Q  230 agagaaatgatatttgtacaatcactttat 259  Q
    ||||||||||||||||||||||||||||||    
T  52727520 agagaaatgatatttgtacaatcactttat 52727491  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 586896 - 586925
Alignment:
Q  228 agagagaaatgatatttgtacaatcacttt 257  Q
    ||||||||||||||||||||||||||||||    
T  586896 agagagaaatgatatttgtacaatcacttt 586925  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 37690429 - 37690462
Alignment:
Q  231 gagaaatgatatttgtacaatcactttatcacaa 264  Q
    ||||||||||||||||||||||||||||| ||||    
T  37690429 gagaaatgatatttgtacaatcactttatgacaa 37690462  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 30535990 - 30536059
Alignment:
Q  230 agagaaatgatatttgtacaatcactttatcacaannnnnnngacaattttctctatcatactcacatta 299  Q
    |||||||||||||||||||||||| ||| | ||||       ||||| ||||||| ||||||||||||||    
T  30535990 agagaaatgatatttgtacaatcattttttaacaatttttgtgacaactttctctctcatactcacatta 30536059  T

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