View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_low_26 (Length: 321)

Name: NF15036_low_26
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_low_26
NF15036_low_26
[»] chr8 (13 HSPs)
chr8 (140-299)||(2848789-2848948)
chr8 (140-301)||(2889173-2889334)
chr8 (140-301)||(3145528-3145689)
chr8 (140-299)||(3160395-3160554)
chr8 (140-298)||(2874502-2874660)
chr8 (140-299)||(2797461-2797620)
chr8 (1-130)||(2891719-2891848)
chr8 (1-130)||(3143414-3143543)
chr8 (1-130)||(2877260-2877389)
chr8 (1-130)||(2794325-2794454)
chr8 (171-246)||(4416986-4417061)
chr8 (1-83)||(3495884-3495966)
chr8 (1-94)||(8627072-8627165)
[»] chr7 (1 HSPs)
chr7 (169-230)||(43313464-43313525)
[»] chr4 (1 HSPs)
chr4 (169-230)||(34743805-34743866)
[»] chr3 (2 HSPs)
chr3 (169-230)||(21531616-21531677)
chr3 (169-230)||(35167557-35167618)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 2848948 - 2848789
Alignment:
Q  140 cctctacactcatatttatgatttgatagtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaaaccgtaatg 239  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  2848948 cctctacactcatatttatcatttgatagtaatatacaaaattaccttgttcattctgcgggttctatccggtatcttttctgaaactgaaaccgtaatg 2848849  T
Q  240 caggctctgaactttataaagtatgatacttcctttcccgatgaggatagggaaattgtt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2848848 caggctctgaactttataaagtatgatacttcctttcccgatgaggatagggaaattgtt 2848789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 140 - 301
Target Start/End: Complemental strand, 2889334 - 2889173
Alignment:
Q  140 cctctacactcatatttatgatttgatagtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaaaccgtaatg 239  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2889334 cctctacactcatatttatcatttgatagtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcttttctgaaactgaaaccgtaatg 2889235  T
Q  240 caggctctgaactttataaagtatgatacttcctttcccgatgaggatagggaaattgttag 301  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2889234 caggctctgaagtttataaagtatgaaacttcctttcccgatgaggatagggaaattgttag 2889173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 140 - 301
Target Start/End: Original strand, 3145528 - 3145689
Alignment:
Q  140 cctctacactcatatttatgatttgatagtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaaaccgtaatg 239  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3145528 cctctacactcatatttatcatttgatagtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcttttctgaaactgaaaccgtaatg 3145627  T
Q  240 caggctctgaactttataaagtatgatacttcctttcccgatgaggatagggaaattgttag 301  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3145628 caggctctgaagtttataaagtatgaaacttcctttcccgatgaggatagggaaattgttag 3145689  T

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Target: chr8; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 140 - 299
Target Start/End: Original strand, 3160395 - 3160554
Alignment:
Q  140 cctctacactcatatttatgatttgatagtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaaaccgtaatg 239  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  3160395 cctctacactcatatttatcatttgatagtaatatacaaaattaccttgttcattctgcaggttctatcaggtatcttttctgaaactgaaaccgtaata 3160494  T
Q  240 caggctctgaactttataaagtatgatacttcctttcccgatgaggatagggaaattgtt 299  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3160495 caggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgtt 3160554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 140 - 298
Target Start/End: Complemental strand, 2874660 - 2874502
Alignment:
Q  140 cctctacactcatatttatgatttgatagtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaaaccgtaatg 239  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2874660 cctctacgctcatatttatcatttgatcgtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcttttctgaaactgaaaccgtaatg 2874561  T
Q  240 caggctctgaactttataaagtatgatacttcctttcccgatgaggatagggaaattgt 298  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  2874560 caggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgt 2874502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 140 - 299
Target Start/End: Original strand, 2797461 - 2797620
Alignment:
Q  140 cctctacactcatatttatgatttgatagtaatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaaaccgtaatg 239  Q
    |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  2797461 cctctacattcatatttatcatttgatggtaatatacaaaattaccttgttcattctgcgggttctatcagctatcttttctgaaactgaaactgtaatg 2797560  T
Q  240 caggctctgaactttataaagtatgatacttcctttcccgatgaggatagggaaattgtt 299  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797561 caggctctgaagtttataaagtatgatacttcctttcccgatgaggatagggaaattgtt 2797620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2891848 - 2891719
Alignment:
Q  1 tttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtctagaaattaacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2891848 tttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtctagaaattaacta 2891749  T
Q  101 aacaagttttgcaaaacaagcatcactact 130  Q
    ||||||||||||||||||||||||||||||    
T  2891748 aacaagttttgcaaaacaagcatcactact 2891719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 3143414 - 3143543
Alignment:
Q  1 tttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtctagaaattaacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3143414 tttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatttaagtagtctagaaattaacta 3143513  T
Q  101 aacaagttttgcaaaacaagcatcactact 130  Q
    ||||||||||||||||||||||||||||||    
T  3143514 aacaagttttgcaaaacaagcatcactact 3143543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2877389 - 2877260
Alignment:
Q  1 tttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtctagaaattaacta 100  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2877389 tttttgtcctgcattgtcaatcgctattaagaccatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtctacaaattaacta 2877290  T
Q  101 aacaagttttgcaaaacaagcatcactact 130  Q
    |||||||||||||||||||| |||||||||    
T  2877289 aacaagttttgcaaaacaagtatcactact 2877260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2794325 - 2794454
Alignment:
Q  1 tttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtctagaaattaacta 100  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2794325 tttttgtcctgcattatcaatcgctgttaagactatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtctagaaaataacta 2794424  T
Q  101 aacaagttttgcaaaacaagcatcactact 130  Q
    ||||||||||||||| ||| ||||||||||    
T  2794425 aacaagttttgcaaagcaaacatcactact 2794454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 4416986 - 4417061
Alignment:
Q  171 atatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaaaccgtaatgcaggctc 246  Q
    ||||||||||||||| |||| ||| || | ||||||||| ||||| |||||||||||||||| ||||| |||||||    
T  4416986 atatacaaaattaccatgttgattttgtgtgttctatcatgtatcttttctgaaactgaaactgtaatacaggctc 4417061  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3495966 - 3495884
Alignment:
Q  1 tttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagt 83  Q
    |||||||||||||||| |||  ||||||| ||| |||||||  ||||| ||||| || || ||||| ||||||||||||||||    
T  3495966 tttttgtcctgcattgccaaaggctgttaagactatgaagaagggagagaaagtgatcttgactgtgaagccacaatgtaagt 3495884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 8627072 - 8627165
Alignment:
Q  1 tttttgtcctgcattgtcaatcgctgttaggaccatgaagatcggagaaaaagtcattttaactgttaagccacaatgtaagtagtctagaaat 94  Q
    |||||||| |||||||||||  |||||||  ||||||||||  ||||| ||||  ||||| ||||| ||||| ||| |||||| ||||| ||||    
T  8627072 tttttgtcttgcattgtcaaaggctgttaaaaccatgaagaagggagagaaagcgattttgactgtgaagccccaacgtaagttgtctacaaat 8627165  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 43313525 - 43313464
Alignment:
Q  169 taatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaa 230  Q
    ||||||||||||||| |||||||||| ||| |||||||||| ||||  ||||| ||||||||    
T  43313525 taatatacaaaattagcttgttcattttgccggttctatcatgtatattttcttaaactgaa 43313464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 34743805 - 34743866
Alignment:
Q  169 taatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaa 230  Q
    ||||||||||||||| |||||||||| ||| |||||||||| ||||  ||||| ||||||||    
T  34743805 taatatacaaaattagcttgttcattttgccggttctatcatgtatattttcttaaactgaa 34743866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 21531616 - 21531677
Alignment:
Q  169 taatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaa 230  Q
    ||||||||||||||| |||||||||| ||| |||||||||| ||||  ||||| ||||||||    
T  21531616 taatatacaaaattagcttgttcattttgccggttctatcatgtatattttcttaaactgaa 21531677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 35167557 - 35167618
Alignment:
Q  169 taatatacaaaattaccttgttcattctgcgggttctatcaggtatcctttctgaaactgaa 230  Q
    ||||||||||||||| |||||||||| ||| |||||||||| ||||  ||||| ||||||||    
T  35167557 taatatacaaaattagcttgttcattttgccggttctatcatgtatattttcttaaactgaa 35167618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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