View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_low_32 (Length: 306)

Name: NF15036_low_32
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_low_32
NF15036_low_32
[»] chr6 (3 HSPs)
chr6 (19-289)||(31265324-31265594)
chr6 (19-293)||(22045256-22045531)
chr6 (34-293)||(22357555-22357815)
[»] chr1 (1 HSPs)
chr1 (34-293)||(12780746-12781006)
[»] chr2 (1 HSPs)
chr2 (19-293)||(44355643-44355918)
[»] scaffold0008 (1 HSPs)
scaffold0008 (19-293)||(84197-84474)
[»] chr8 (3 HSPs)
chr8 (76-293)||(31395865-31396083)
chr8 (19-290)||(2501335-2501607)
chr8 (19-293)||(2501933-2502207)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 31265324 - 31265594
Alignment:
Q  19 cttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265324 cttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaat 31265423  T
Q  119 gtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaatatgtttgcacatcaaatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265424 gtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaatatgtttgcacatcaaatat 31265523  T
Q  219 agggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265524 agggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgt 31265594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 22045531 - 22045256
Alignment:
Q  19 cttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaat 118  Q
    |||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | ||| ||||||||||||| |||    
T  22045531 cttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgagcactattttcttttaat 22045432  T
Q  119 gtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaatatgtttgcacatcaaata 217  Q
     ||||||||||||| ||||||| ||| || | | ||||||||| | |||  ||| ||| |||  ||||||||||| ||| ||| | ||||||||||||||    
T  22045431 atcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccatataagcttgcacatcaaata 22045332  T
Q  218 tagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttc 293  Q
     |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||| ||||||||||    
T  22045331 aagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcatttaccatgtcttc 22045256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 293
Target Start/End: Original strand, 22357555 - 22357815
Alignment:
Q  34 tcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatca 133  Q
    |||||| |||||||||| | ||||||||||| | | |||| |  |  ||||||||| |  | |||||||||||||| |||| ||| |||||||||||||     
T  22357555 tcctacctgttttgacccacttcctacttccacgctactttgcatcaaaatattttccctaccatgaacactatttgcttttaatatcctcatatcatcc 22357654  T
Q  134 tcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccat 232  Q
    ||||||| ||| ||||   ||| ||||| | |||  | | ||| |||  ||||||||||| ||| ||| | |||||||||||||| |||| || ||||||    
T  22357655 tcaaggattgaaacccgggaaaacaaatctttgtgtttacccaccaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccat 22357754  T
Q  233 ctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttc 293  Q
    |||||| ||||  |  ||||||||||| ||||||||||| |||||  ||||||||||||||    
T  22357755 ctctaataccaacttgataatggttaacggcttgaacaaagacattgttttccatgtcttc 22357815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 34 - 293
Target Start/End: Original strand, 12780746 - 12781006
Alignment:
Q  34 tcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatca 133  Q
    |||||||| |||||| | | ||||||||||||||||||||||||| |||||||||| |  |   | |||| | ||| |||| |||||||||||||||||     
T  12780746 tcctacatattttgaaccacttcctacttccccaccacttggtttcgaaatattttccctactttcaacattgtttgcttttaatgtcctcatatcatcc 12780845  T
Q  134 tcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccat 232  Q
    |||||   ||| |||| || ||| ||||   |||  ||| ||||||| |||||||||||| ||||||| |||||||||||||||| ||||  | || |||    
T  12780846 tcaagtgttgaaacccgattaagaaaatccttgtgttcacccatcaacttttgatgttcagccaaataagtttgcacatcaaatagagggtttgcatcat 12780945  T
Q  233 ctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttc 293  Q
    |||||||||||  | || ||||||||| ||||||||||||||| |||||||||||||||||    
T  12780946 ctctaaaaccaacttcaaaatggttaacggcttgaacaaggacttcattttccatgtcttc 12781006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 44355918 - 44355643
Alignment:
Q  19 cttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaat 118  Q
    |||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | ||| ||||||||||||| |||    
T  44355918 cttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgagcactattttcttttaat 44355819  T
Q  119 gtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaatatgtttgcacatcaaata 217  Q
     ||||||||||||| ||||||| ||| || | | ||||||||| | |||  ||| ||| |||  ||||||||||| ||| ||| | ||||||||||||||    
T  44355818 atcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccatataagcttgcacatcaaata 44355719  T
Q  218 tagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttc 293  Q
     |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||| ||||||||||    
T  44355718 aagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcatttaccatgtcttc 44355643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 84197 - 84474
Alignment:
Q  19 cttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttca-- 116  Q
    |||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| || | | |||||||||||| |||| |      
T  84197 cttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccttaccgtgaacactatttgcttttaat 84296  T
Q  117 atgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaatatgtttgcacatcaaa 215  Q
    || ||||||||||||| ||||||| ||| || |   ||||||||| | |||  ||||||| |||  ||||||||| | ||| ||| | ||||||||||||    
T  84297 atctcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttgtgttcatccaccaacctttgatgtttagccatataagcttgcacatcaaa 84396  T
Q  216 tatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttc 293  Q
    || |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||||||||||||||    
T  84397 taaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcattttccatgtcttc 84474  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 293
Target Start/End: Original strand, 31395865 - 31396083
Alignment:
Q  76 ttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatcc 175  Q
    |||||||||||||| |  | | ||||||||||||||||| ||| ||||||||||||| ||||||| ||| || |   ||||||||| | | |  ||  ||    
T  31395865 ttttgaaatattttccctaccgtgaacactattttcttttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttttgttcgccc 31395964  T
Q  176 atcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaagga 274  Q
    | |||  ||||||||||| ||| ||| | |||||||||||||| |||| || ||||||||| || ||||  | || ||||||||| ||||| ||||| ||    
T  31395965 accaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttcaaaatggttaacggctttaacaaaga 31396064  T
Q  275 catcattttccatgtcttc 293  Q
    ||||||||| |||||||||    
T  31396065 catcatttttcatgtcttc 31396083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 2501607 - 2501335
Alignment:
Q  19 cttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaaca-tgaacactattttctttcaa 117  Q
    |||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| ||| ||  ||||||||||||  ||| ||    
T  2501607 cttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatagaaatatttt-ctctactgtgaacactatttgattttaa 2501509  T
Q  118 tgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcacatcaaat 216  Q
    | ||||||||||||| ||||||| ||| || |   ||||||||| | |||  ||  ||| |||  ||||||||||| ||| ||| | |||||||||||||    
T  2501508 tatcctcatatcatcctcaaggattgaaacacgggaaagcaaatatttgtgttcgcccaccaacctttgatgttcagccatataagcttgcacatcaaat 2501409  T
Q  217 atagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtc 290  Q
    | |||| |  ||||||||| || ||||  | || ||||||||| ||||| ||| | ||||||||||||||||||    
T  2501408 aaagggtacgcaccatctccaataccaacttcagaatggttaacggctttaaccaagacatcattttccatgtc 2501335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 2501933 - 2502207
Alignment:
Q  19 cttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaat 118  Q
    |||||||||||||  ||| || |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | |||||||||||| |||| |||    
T  2501933 cttaccacacttaactcc-acctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgctttaaat 2502031  T
Q  119 gtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcacatcaaata 217  Q
     || |||||||||| ||||||| ||| || |   ||||||||| | |||  ||  ||| |||  ||||||||||| ||| ||| | ||||||||||||||    
T  2502032 atcatcatatcatcctcaaggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgttcagccatataagcttgcacatcaaata 2502131  T
Q  218 tagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttc 293  Q
     |||  || ||||||||| || ||||  | || ||| ||||| ||||| ||| |  ||||||||||||||||||||    
T  2502132 aaggatatgcaccatctccaataccaacttcagaatcgttaacggctttaaccaatacatcattttccatgtcttc 2502207  T

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