View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_35 (Length: 290)
Name: NF15036_low_35
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 29206380 - 29206101
Alignment:
| Q |
1 |
caagtatcaatagtgcccccaaacaaaggtagcagattgtgtttgtaaactggatctgccagtttgaccagtggagaaccagttgaattggtaaaaaggt |
100 |
Q |
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| T |
29206380 |
caagtatcaatagtgcccccaaacaaaggtagcagattgtgtttgtaaactggatctgccagtttgaccagtggagaaccagttgaattggtaaaaaggt |
29206281 |
T |
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| Q |
101 |
ggaaaagttgtcatcttattttacttagaagacataacatagtcaattatattaaattaaattaaattattttcctatgttgagtactattaatcaccat |
200 |
Q |
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| T |
29206280 |
ggaaaagttgtcatcttattttacttagaagacataacatagtcaattatattaaattaaattaaattattttcctatgttgagtactattaatcaccat |
29206181 |
T |
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| Q |
201 |
gggaaaataatttttcctatgttcgggtcaagtccactgtcactgatctggactctgaaccacctccaagaacccctatg |
280 |
Q |
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| T |
29206180 |
aggaaaataatttttcctatgttcgggtcaagtccactgtcactgatctggactctgaaccacctccaagaacccctatg |
29206101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 12645479 - 12645774
Alignment:
| Q |
1 |
caagtatcaatagtgcccccaaacaaaggtagcagattgtgtttgtaaactggatctgccagtttgaccagtggagaaccagttgaattggtaaaaaggt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12645479 |
caagtatcaatagtgcccc-aaacaaaggtagcagattgtttttgtaaactggatctgccagtttgaccagtggagaaccagttgaattggtaaaaaggt |
12645577 |
T |
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| Q |
101 |
ggaaaagttgtcat----------------------cttattttacttagaagacataacatagtcaattatattaaattaaattaaattattttcctat |
178 |
Q |
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| T |
12645578 |
ggaaaagttgtcattatttttcatattatttatcatcttattttacttagaagacataacatagtcaattatattaatttaa-----attattttcctat |
12645672 |
T |
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| Q |
179 |
gttgagtactattaatcaccatgggaaaataatttttcctatgttcgggtcaagtccactgtcactgatctggactctgaaccacctccaagaaccccta |
278 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
12645673 |
gttgagtactattaatcaccgtaggaaaataatttttcctatgttcagatcaagtccactgtcactgatctggactttgaaccaccttcaagaaccccta |
12645772 |
T |
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