View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_36 (Length: 277)
Name: NF15036_low_36
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 34522737 - 34522990
Alignment:
| Q |
1 |
ggtagataaataaacatctttaacttgtacatactagaaaaataagtagctgtacatatcttcggcacacaaataaccctctatagttgaagaagttata |
100 |
Q |
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| T |
34522737 |
ggtagataaataaacatctttaactcatacatactagaaaaataagatgctttacatatcttcggcacacaaataaccctctatagttgaagaagttaga |
34522836 |
T |
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| Q |
101 |
ggatcgggattcacactctggtgaaggagaaaatgctactacacgttttgatagaaactggtacaaaaatacaacttaactgtagaaacagacttttatt |
200 |
Q |
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| T |
34522837 |
ggatcgggattcacactctggtgaaggagaaaatgctactacacattttgatagaaactggtacaaaaatacaacttaactgtagaaactgacttttatt |
34522936 |
T |
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| Q |
201 |
aatagcagaaacatttacaacaaacaattacataaactatagataatgtagaat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34522937 |
aatagcagaaacatttacaacaaacaattacataaactatagataatgtagaat |
34522990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 38198506 - 38198608
Alignment:
| Q |
152 |
tagaaactggtacaaaaatacaacttaactgtagaaacagacttttattaatagcagaaacatttacaacaaacaattacataaactatagataatgtag |
251 |
Q |
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| T |
38198506 |
tagaaactggtaccaaaatacattttaatagtagaaactgtcttttattgatggccgaaacgcttacaacaaacaactacacacactatagataatatag |
38198605 |
T |
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| Q |
252 |
aat |
254 |
Q |
| |
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||| |
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| T |
38198606 |
aat |
38198608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 54886722 - 54886817
Alignment:
| Q |
152 |
tagaaactggtacaaaaatacaacttaactgtagaaacagacttttattaatagcagaaacatttacaacaaacaattacataaactatagataat |
247 |
Q |
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||||||||||||| |||||||| |||| |||||||| | |||||||| || ||||| || ||||||| |||||||||| || ||| |||||||| |
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| T |
54886722 |
tagaaactggtaccaaaatacattttaatggtagaaactgtcttttattgatggcagacacgtttacaagaaacaattacgtacactgtagataat |
54886817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 44260659 - 44260764
Alignment:
| Q |
151 |
atagaaactggtacaaaaatacaacttaactgtagaaacagacttttattaatagcagaaacatttacaacaaaca--attacataaactatagataatg |
248 |
Q |
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|||||||| ||||| || |||||| |||| || |||||| ||||||||| || |||||||| ||| ||||||||| | |||| | ||||||||||||| |
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| T |
44260659 |
atagaaaccggtaccaatatacaatttaattgcagaaactgacttttatcgatggcagaaacgtttgcaacaaacagaaatacacacactatagataatg |
44260758 |
T |
|
| Q |
249 |
tagaat |
254 |
Q |
| |
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|||||| |
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| T |
44260759 |
tagaat |
44260764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 49987103 - 49987152
Alignment:
| Q |
205 |
gcagaaacatttacaacaaacaattacataaactatagataatgtagaat |
254 |
Q |
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||||||||| |||||||||||||||||| | |||||||||||| |||||| |
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| T |
49987103 |
gcagaaacacttacaacaaacaattacacacactatagataatatagaat |
49987152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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