View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_low_39 (Length: 268)

Name: NF15036_low_39
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_low_39
NF15036_low_39
[»] chr4 (6 HSPs)
chr4 (13-246)||(50065240-50065475)
chr4 (6-246)||(2033449-2033685)
chr4 (6-246)||(25515882-25516127)
chr4 (6-93)||(25537576-25537663)
chr4 (101-233)||(28070655-28070787)
chr4 (169-249)||(25537706-25537786)
[»] chr5 (7 HSPs)
chr5 (6-246)||(2642099-2642342)
chr5 (6-95)||(11017718-11017807)
chr5 (32-93)||(2315304-2315366)
chr5 (104-151)||(2315231-2315278)
chr5 (103-134)||(11019468-11019499)
chr5 (37-93)||(5601047-5601103)
chr5 (37-93)||(5610693-5610749)
[»] chr3 (9 HSPs)
chr3 (6-246)||(37920334-37920575)
chr3 (6-246)||(35125602-35125848)
chr3 (6-148)||(36432292-36432443)
chr3 (30-91)||(19389258-19389319)
chr3 (196-246)||(36432488-36432537)
chr3 (37-93)||(48979133-48979189)
chr3 (37-93)||(48988673-48988729)
chr3 (103-134)||(9296175-9296206)
chr3 (169-197)||(19388461-19388489)
[»] chr1 (1 HSPs)
chr1 (6-246)||(23551294-23551538)
[»] chr8 (6 HSPs)
chr8 (31-246)||(988891-989111)
chr8 (23-246)||(7837678-7837903)
chr8 (23-246)||(7808248-7808473)
chr8 (87-246)||(13960833-13960986)
chr8 (11-92)||(13959120-13959201)
chr8 (103-134)||(7803493-7803524)
[»] chr6 (1 HSPs)
chr6 (23-241)||(30636549-30636773)
[»] chr2 (2 HSPs)
chr2 (37-93)||(1791415-1791471)
chr2 (37-93)||(1800960-1801016)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 50065240 - 50065475
Alignment:
Q  13 gagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag--------ggaccataaaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||| ||||    
T  50065240 gagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgactgaaataaataaagtaataaacggaccaaaaaa 50065339  T
Q  105 aatattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgccaattgt 204  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||              ||||||||||||||||||||||||||||||||||||    
T  50065340 aatattcatattgaaagacattgaatatgaattatgaaaaatattcacgtaagagaga------ttgaattcttttgtattgtaagctcttgccaattgt 50065433  T
Q  205 cttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50065434 cttgatatgttgctatatttatagatggttggagtctttgaa 50065475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 2033685 - 2033449
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaat--------aaagggac 97  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||        |||||||     
T  2033685 aggatcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctagaatatatgactaaaataaataaagtaataaagggat 2033586  T
Q  98 ca-taaaaaatattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttg 196  Q
    ||  |||||||||||||||||||||||||||||| |||       |||||||||| ||              ||||||||||||||||||||||||||||    
T  2033585 caggaaaaaatattcatattgaaagacattgaatgtga-------aaaatattcacgt------gtgagagattgaattcttttgtattgtaagctcttg 2033499  T
Q  197 ccaattgtcttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||||||||    
T  2033498 ccaattgccttgatatgttactatatttatagatggttgaagtctttgaa 2033449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 25516127 - 25515882
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaat--------aaagggac 97  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||||||    
T  25516127 aggatcagaaaatttcagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgactaaaataaataaagtaataaagggac 25516028  T
Q  98 ca-taaaaaatattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttg 196  Q
     |  ||||||||||||||||||||||||||||| |||||||||  |||||||||| ||              ||||||| ||||||| | ||||||||||    
T  25516027 gagaaaaaaatattcatattgaaagacattgaacatgaattatgcaaaatattcacgt----gagagagatattgaattattttgtactctaagctcttg 25515932  T
Q  197 ccaattgtcttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
     |||||| ||||||||||||||||||||||||||||||||| || |||||    
T  25515931 tcaattgccttgatatgttgctatatttatagatggttggattcgttgaa 25515882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 25537576 - 25537663
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag 93  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  25537576 aggatcagagaattccagattgtatatttaaaataaagtaaataaaaggactggagaattctggaatatatgactgaaataaataaag 25537663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 101 - 233
Target Start/End: Complemental strand, 28070787 - 28070655
Alignment:
Q  101 aaaaaatattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgccaa 200  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||| ||              |||||||||||||||||||||||||||| |||    
T  28070787 aaaaaatgttcatattgaaagacattgaatatgaattatgaaaaatattcacgtgagagagagagagattgaattcttttgtattgtaagctcttgtcaa 28070688  T
Q  201 ttgtcttgatatgttgctatatttatagatggt 233  Q
    ||| |||||||||||||||||||||||||||||    
T  28070687 ttgccttgatatgttgctatatttatagatggt 28070655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 25537706 - 25537786
Alignment:
Q  169 ttgaattcttttgtattgtaagctcttgccaattgtcttgatatgttgctatatttatagatggttggagtctttgaaact 249  Q
    |||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||||||||||| |||| ||||||||    
T  25537706 ttgaattcttttgtattgtaagctattgtcaattgccttgatatgttgttatatttatagatggttgaagtcgttgaaact 25537786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 2642342 - 2642099
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgact---taaataaa----taaagggacc 98  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     ||||||||    ||||||||||    
T  2642342 aggaacagagaattctagattgtatatttaaaataaagtaaataaaaggactggagaattctggaatatatgatgaaataaataaagtaataaagggacc 2642243  T
Q  99 ataaaaaatattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgcc 198  Q
    | ||||||||||||||| |||||||||||||||||||||||  |||||||||| ||              ||||||||||||||||||||||||||||||    
T  2642242 agaaaaaatattcatatcgaaagacattgaatatgaattatgaaaaatattcacgtgagagagaga----ttgaattcttttgtattgtaagctcttgcc 2642147  T
Q  199 aattgtcttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2642146 aattgtcttgatatgttgctatatttatagatggttggagtctttgaa 2642099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 11017718 - 11017807
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaaggg 95  Q
    |||| ||||||| ||  ||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||    
T  11017718 aggaccagagaactctggattgtatatttaaaattaagtaaataaaaggaccaaagaattctggaatatattactgaaataaataaaggg 11017807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 2315366 - 2315304
Alignment:
Q  32 tttaaaataaagt-aaataaaaggactagagaattctggaatatatgacttaaataaataaag 93  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2315366 tttaaaataaagttaaataaaaggactagagaattctggaatatatgactgaaataaataaag 2315304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 2315278 - 2315231
Alignment:
Q  104 aaatattcatattgaaagacattgaatatgaattatagaaaatattca 151  Q
    |||||||||||| |||||||||||||||| ||||||  ||||||||||    
T  2315278 aaatattcatatcgaaagacattgaatataaattatgaaaaatattca 2315231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 134
Target Start/End: Original strand, 11019468 - 11019499
Alignment:
Q  103 aaaatattcatattgaaagacattgaatatga 134  Q
    ||||||||||||||||||||||||||||||||    
T  11019468 aaaatattcatattgaaagacattgaatatga 11019499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 5601103 - 5601047
Alignment:
Q  37 aataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag 93  Q
    |||||||||||||||||||| ||| | |||||||||| |  ||| ||||||||||||    
T  5601103 aataaagtaaataaaaggaccagaaagttctggaataaaatactgaaataaataaag 5601047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 5610749 - 5610693
Alignment:
Q  37 aataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag 93  Q
    |||||||||||||||||||| ||| | |||||||||| |  ||| ||||||||||||    
T  5610749 aataaagtaaataaaaggaccagaaagttctggaataaaatactgaaataaataaag 5610693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 37920575 - 37920334
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag--------ggac 97  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||        ||||    
T  37920575 aggatcagagaattcca-attgtatatttaaaataaagtaaataaaaggactagagaattctggaacatatgactgaaataaataaagtaataaagggac 37920477  T
Q  98 cataaaaaatattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgc 197  Q
    || ||||||||||||||| |||||||||||||||||||||||  |||||||||| ||              |||||||||||||||||||||| ||||||    
T  37920476 cagaaaaaatattcatatcgaaagacattgaatatgaattatgaaaaatattcacgtaagagaga------ttgaattcttttgtattgtaagttcttgc 37920383  T
Q  198 caattgtcttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37920382 caattgtcttgatatgttgctatatttatacatggttggagtctttgaa 37920334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 35125848 - 35125602
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag--------ggac 97  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||        ||||    
T  35125848 aggatcagagaattccatattgtatatttaaaataaagtaaataaaaggactagagaattgtagaatatataactgaaataaataaagtaataaagggac 35125749  T
Q  98 cataaaaaa--tattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctctt 195  Q
    || ||||||  |||||||||||||||||||||||||||||||||  ||||||||||  |              |||||||||||||||||||||||||||    
T  35125748 caaaaaaaacatattcatattgaaagacattgaatatgaattatgaaaaatattcacctgagagagaga----ttgaattcttttgtattgtaagctctt 35125653  T
Q  196 gccaattgtcttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35125652 gccaattgccttgatatgttgctatatttatagatggttggagtctttgaa 35125602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 36432292 - 36432443
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaa-taaagtaaataaaaggactagagaattctggaatatatgacttaaata--------aataaaggga 96  Q
    |||| ||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||        ||||||||||    
T  36432292 aggatcagagaatttcagattatatatttaaaaataaagtaaataaaaggattagagaattctgaaatatatgactgaaataaataaagtaataaaggga 36432391  T
Q  97 ccataaaaaatattcatattgaaagacattgaatatgaattatagaaaatat 148  Q
    ||| |||||||||||||||||||||||||||||||||||||||  |||||||    
T  36432392 ccagaaaaaatattcatattgaaagacattgaatatgaattatgaaaaatat 36432443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 19389319 - 19389258
Alignment:
Q  30 tatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataa 91  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  19389319 tatttaaaataaagtaaataaaaggattagagaattctagaatatatgactgaaataaataa 19389258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 36432488 - 36432537
Alignment:
Q  196 gccaattgtcttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  36432488 gccaattgtcttgacatcttgctatatt-atagatggttggagtctttgaa 36432537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 48979189 - 48979133
Alignment:
Q  37 aataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag 93  Q
    |||||||||||||||||||| ||| |||||||||||| |  ||| ||||||||||||    
T  48979189 aataaagtaaataaaaggaccagaaaattctggaataaaatactgaaataaataaag 48979133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 48988729 - 48988673
Alignment:
Q  37 aataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag 93  Q
    |||||||||||||||||||| ||| |||||||||||| |  ||| ||||||||||||    
T  48988729 aataaagtaaataaaaggaccagaaaattctggaataaaatactgaaataaataaag 48988673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 134
Target Start/End: Original strand, 9296175 - 9296206
Alignment:
Q  103 aaaatattcatattgaaagacattgaatatga 134  Q
    ||||||||||||||||||||||||||||||||    
T  9296175 aaaatattcatattgaaagacattgaatatga 9296206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 19388489 - 19388461
Alignment:
Q  169 ttgaattcttttgtattgtaagctcttgc 197  Q
    |||||||||||||||||||||||||||||    
T  19388489 ttgaattcttttgtattgtaagctcttgc 19388461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 23551538 - 23551294
Alignment:
Q  6 aggagcagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaat--------aaagggac 97  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||||||    
T  23551538 aggatcagagaatttcagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgactgaaataaataaagtaataaagggac 23551439  T
Q  98 cataaaaaatattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgc 197  Q
     | |||||||||||||||||||||||||| ||||||||||||  |||||||||| ||              |||||||||||||||||||||||||||||    
T  23551438 tagaaaaaatattcatattgaaagacatttaatatgaattatgaaaaatattcacgt----gaaagagagattgaattcttttgtattgtaagctcttgc 23551343  T
Q  198 caattgtcttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
    |||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  23551342 caattaccttgatacgttgctatatttatagatggttggagtctttgaa 23551294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 989111 - 988891
Alignment:
Q  31 atttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag--------ggaccataaaaaa-tattcatattgaaag 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||| |||||| |||||||||||||||    
T  989111 atttaaaataaagtaaataaaaggactagagaattctggaatatatgactgaaataaataaagtaaaaaagggaccagaaaaaaatattcatattgaaag 989012  T
Q  122 acattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgccaattgtcttgatatgttgctata 221  Q
    ||||||||||||||||||  |||||||||| ||              ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  989011 acattgaatatgaattatgaaaaatattcacgtgagagagaga----ttgaattcttttgtattgtaagctcttgccaattgccttgatatgttgctata 988916  T
Q  222 tttatagatggttggagtctttgaa 246  Q
    |||||||||||||||||||||||||    
T  988915 tttatagatggttggagtctttgaa 988891  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 7837903 - 7837678
Alignment:
Q  23 gattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag--------ggaccataaaaaatattcata 114  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||| ||||||||||||        ||| || ||||||| ||||||    
T  7837903 gattgtatatttaaaataaagtaaataaaaggaccagttaattctggaatatataactgaaataaataaagtaataaagggatcagaaaaaatgttcata 7837804  T
Q  115 ttgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgccaattgtcttgatatgt 214  Q
    |||||||||||||||||||||||||  ||||||| || ||              ||||||||||||||||||||||||||||||||||| ||||||||||    
T  7837803 ttgaaagacattgaatatgaattatgaaaaatatacacgtgagagaga------ttgaattcttttgtattgtaagctcttgccaattgccttgatatgt 7837710  T
Q  215 tgctatatttatagatggttggagtctttgaa 246  Q
    |||||||||||||||||| |||||||||||||    
T  7837709 tgctatatttatagatggctggagtctttgaa 7837678  T

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Target: chr8; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 7808473 - 7808248
Alignment:
Q  23 gattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag--------ggaccataaaaaatattcata 114  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||| ||||||||||||        ||| || ||||||| || |||    
T  7808473 gattgtatatttaaaataaagtaaataaaaggaccagttaattctggaatatataactgaaataaataaagtaataaagggatcagaaaaaatgtttata 7808374  T
Q  115 ttgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgccaattgtcttgatatgt 214  Q
    |||||||||||||||||||||||||  |||||||||| ||              |||||||||||||||||||||  |||||||||||| ||||||||||    
T  7808373 ttgaaagacattgaatatgaattatgaaaaatattcacgtgagagaga------ttgaattcttttgtattgtaaattcttgccaattgccttgatatgt 7808280  T
Q  215 tgctatatttatagatggttggagtctttgaa 246  Q
    |||||||||||||||||| |||||||||||||    
T  7808279 tgctatatttatagatggctggagtctttgaa 7808248  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 246
Target Start/End: Original strand, 13960833 - 13960986
Alignment:
Q  87 aataaagggaccataaaaaatattcatattgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattg 186  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||  |||||||||| ||              ||||||||||||||||||    
T  13960833 aataaaggaaccagaaaaaatattcatattgaaagacattgaatatgaattatgaaaaatattcacgtgagagaga------ttgaattcttttgtattg 13960926  T
Q  187 taagctcttgccaattgtcttgatatgttgctatatttatagatggttggagtctttgaa 246  Q
    |||||||||||||||||  |||||||||||||||||||||| |||| |||||| ||||||    
T  13960927 taagctcttgccaattgcattgatatgttgctatatttatatatggctggagtttttgaa 13960986  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 13959120 - 13959201
Alignment:
Q  11 cagagaattccagattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaa 92  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  13959120 cagagaattctggattgtatatttaaaataaagtaaataaaaggaccagagaattctggaatatatgactgaaataaataaa 13959201  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 134
Target Start/End: Complemental strand, 7803524 - 7803493
Alignment:
Q  103 aaaatattcatattgaaagacattgaatatga 134  Q
    ||||||||||||||||||||||||||||||||    
T  7803524 aaaatattcatattgaaagacattgaatatga 7803493  T

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Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 30636773 - 30636549
Alignment:
Q  23 gattgtatatttaaaataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag--------ggaccataaaaaatattcata 114  Q
    |||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||| ||||||||||||        |||||| ||||||| ||||||    
T  30636773 gattgtatatttaaaataaattaaataaaaggaccagataattatggaatatatgactgaaataaataaagtaataaagggaccagaaaaaatgttcata 30636674  T
Q  115 ttgaaagacattgaatatgaattatagaaaatattcaagtnnnnnnnnnnnnnnttgaattcttttgtattgtaagctcttgccaattgtcttgatatgt 214  Q
    |||||||||||||||||||||||||  |||||||||| ||              ||||||||||||||||||||||||||||||||||| ||||||||||    
T  30636673 ttgaaagacattgaatatgaattatgaaaaatattcacgtgagagagagaga--ttgaattcttttgtattgtaagctcttgccaattgccttgatatgt 30636576  T
Q  215 tgctatatttatagatggttggagtct 241  Q
    |||||||||||||||||| | ||||||    
T  30636575 tgctatatttatagatggctagagtct 30636549  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 1791471 - 1791415
Alignment:
Q  37 aataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag 93  Q
    |||||||||||||||||||| ||| |||||||||||| |  ||| ||||||||||||    
T  1791471 aataaagtaaataaaaggaccagaaaattctggaataaaatactgaaataaataaag 1791415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 1801016 - 1800960
Alignment:
Q  37 aataaagtaaataaaaggactagagaattctggaatatatgacttaaataaataaag 93  Q
    |||||||||||||||||||| ||| |||||||||||| |  ||| ||||||||||||    
T  1801016 aataaagtaaataaaaggaccagaaaattctggaataaaatactgaaataaataaag 1800960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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