View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_low_4 (Length: 503)

Name: NF15036_low_4
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_low_4
NF15036_low_4
[»] chr8 (13 HSPs)
chr8 (223-493)||(5947306-5947576)
chr8 (1-225)||(5947052-5947273)
chr8 (420-491)||(5958598-5958669)
chr8 (223-281)||(5982892-5982950)
chr8 (423-491)||(5983119-5983187)
chr8 (223-278)||(5919421-5919476)
chr8 (298-354)||(5919466-5919522)
chr8 (329-423)||(5958458-5958564)
chr8 (317-379)||(5982964-5983027)
chr8 (13-82)||(5982740-5982807)
chr8 (420-479)||(5919953-5920012)
chr8 (164-225)||(5958321-5958376)
chr8 (236-281)||(5847388-5847437)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 223 - 493
Target Start/End: Original strand, 5947306 - 5947576
Alignment:
Q  223 catgcaaatggatcctaaacgtacattacatatttattgaacttcaacaagcatcacttcatccattcaaataaaaacaagcatcacttcatgtaagtgc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947306 catgcaaatggatcctaaacgtacattacatatttattgaacttcaacaagcatcacttcatccattcaaataaaaacaagcatcacttcatgtaagtgc 5947405  T
Q  323 ctgaactagcaatgttcaggttagcaaataaataaaagctctacacactcttgacaacaacaaaaatacattacatatataatcaaatgcatagaaataa 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947406 ctgaactagcaatgttcaggttagcaaataaataaaagctctacacactcttgacaacaacaaaaatacattacatatataatcaaatgcatagaaataa 5947505  T
Q  423 ttaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggcaatgatgatg 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947506 ttaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggcaatgatgatg 5947576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5947052 - 5947273
Alignment:
Q  1 ttttggagtatgtatgcatgctggcctcctctacctataggtcaaattaaaggacactagcctttaattaacaaggatgtaggtcatcatccataaatgg 100  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  5947052 ttttggagtatgcatgcatgctggcctcctctaccta--ggtcaaattaaaggacactagcctttaattgacaaagatgtaggtcatcatccataaatgg 5947149  T
Q  101 aacaaacgacgtaaatgcttaatttaagtgcctgaaccggnnnnnnnccttattttaaagtacaccctaatggacacataattagttacaaataacaatc 200  Q
    ||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5947150 aacaaacgacgtaaacgcttaatttaagtgcctgaaccgg-aaaaaaccttattttaaagtacaccctaatggatacataattagttacaaataacaatc 5947248  T
Q  201 acatgtagctctccataaataacat 225  Q
    |||||||||||||||||||||||||    
T  5947249 acatgtagctctccataaataacat 5947273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 420 - 491
Target Start/End: Original strand, 5958598 - 5958669
Alignment:
Q  420 taattaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggcaatgatga 491  Q
    ||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||| ||||||||||||||    
T  5958598 taattaagactcccatcctaaaggaattataggatttgtgactatttggctgattgatgatggcaatgatga 5958669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 5982892 - 5982950
Alignment:
Q  223 catgcaaatggatcctaaacgtacattacatatttattgaacttcaacaagcatcactt 281  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  5982892 catgcaaatggatcctaaacgtacatttcatatttattgaactttaacaagcatcactt 5982950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 423 - 491
Target Start/End: Original strand, 5983119 - 5983187
Alignment:
Q  423 ttaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggcaatgatga 491  Q
    ||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||| |||||||||    
T  5983119 ttaagactcccatcctaaaggaataataggattagtgactatgtggctgcttgaggatgacaatgatga 5983187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 5919421 - 5919476
Alignment:
Q  223 catgcaaatggatcctaaacgtacattacatatttattgaacttcaacaagcatca 278  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  5919421 catgcaaatggaacctaaaagtacattacatatttattgaacttcaacaagcatca 5919476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 5919466 - 5919522
Alignment:
Q  298 aacaagcatcacttcatgtaagtgcctgaactagcaatgttcaggttagcaaataaa 354  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||    
T  5919466 aacaagcatcatttaatgtaagtgcctgaactagcaatgttcaggttaacaaataaa 5919522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 423
Target Start/End: Original strand, 5958458 - 5958564
Alignment:
Q  329 tagcaatgttcaggttagcaaataaataaaagctct----------acacactcttgacaacaaca--aaaatacattacatatataatcaaatgcatag 416  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||||||| |  |||||||||||||||||||||  |||||| ||    
T  5958458 tagcaatgttcaggttagcaaataaataaaagctctacacacacacacacactcttgacaacaaaattaaaatacattacatatataatttaatgcaaag 5958557  T
Q  417 aaataat 423  Q
    |||||||    
T  5958558 aaataat 5958564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 5982964 - 5983027
Alignment:
Q  317 aagtgcctgaactagcaatgttcaggttagcaaataaa-taaaagctctacacactcttgacaa 379  Q
    ||||||||||||||||| |||||| |||| |||||| | |||||||||||||||||||||||||    
T  5982964 aagtgcctgaactagcagtgttcaagttaacaaatacactaaaagctctacacactcttgacaa 5983027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 5982740 - 5982807
Alignment:
Q  13 tatgcatgctggcctcctctacctataggtcaaattaaaggacactagcctttaattaacaaggatgtag 82  Q
    |||||||||||||||||||||| ||   |||||||||||| |||||||||||||||| || |||||||||    
T  5982740 tatgcatgctggcctcctctacgtac--gtcaaattaaagtacactagcctttaattcaccaggatgtag 5982807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 479
Target Start/End: Original strand, 5919953 - 5920012
Alignment:
Q  420 taattaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgagga 479  Q
    |||||||| |||||||||||| |||||| |||||||| |||| | |||||||||||||||    
T  5919953 taattaaggctcccatcctaatggaatagtaggatttttgactacttggctgcttgagga 5920012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 5958321 - 5958376
Alignment:
Q  164 accctaatggacacataattagttacaaataacaatcacatgtagctctccataaataacat 225  Q
    ||||||||||| |||||||||||||      ||||| |||||||||||||||||||||||||    
T  5958321 accctaatggaaacataattagtta------acaataacatgtagctctccataaataacat 5958376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 5847388 - 5847437
Alignment:
Q  236 cctaaacgtacattacata----tttattgaacttcaacaagcatcactt 281  Q
    |||||||||||||||||||    |||||||||||||||||| ||||||||    
T  5847388 cctaaacgtacattacatagtattttattgaacttcaacaaacatcactt 5847437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University