View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_low_43 (Length: 255)

Name: NF15036_low_43
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_low_43
NF15036_low_43
[»] chr6 (5 HSPs)
chr6 (11-255)||(30516999-30517243)
chr6 (15-221)||(24713954-24714160)
chr6 (15-221)||(33334796-33335002)
chr6 (15-193)||(14741319-14741497)
chr6 (16-221)||(24434802-24434998)
[»] chr8 (9 HSPs)
chr8 (15-221)||(18869390-18869596)
chr8 (15-221)||(19751256-19751462)
chr8 (15-221)||(26402069-26402275)
chr8 (15-221)||(10687984-10688190)
chr8 (15-221)||(33036653-33036859)
chr8 (15-221)||(34587136-34587342)
chr8 (15-221)||(35741550-35741756)
chr8 (15-221)||(26297544-26297749)
chr8 (15-221)||(26310801-26311006)
[»] chr4 (6 HSPs)
chr4 (11-221)||(9228052-9228262)
chr4 (15-221)||(16627712-16627918)
chr4 (11-221)||(3791852-3792062)
chr4 (15-221)||(18856737-18856943)
chr4 (72-122)||(5144138-5144188)
chr4 (153-221)||(5144209-5144277)
[»] chr7 (9 HSPs)
chr7 (15-221)||(9188865-9189071)
chr7 (11-221)||(21984290-21984500)
chr7 (15-221)||(21640851-21641057)
chr7 (15-221)||(24265043-24265249)
chr7 (16-221)||(12397917-12398122)
chr7 (15-221)||(16881088-16881294)
chr7 (15-217)||(24273629-24273831)
chr7 (15-98)||(18409827-18409910)
chr7 (153-221)||(18409956-18410024)
[»] chr3 (8 HSPs)
chr3 (11-221)||(22172028-22172238)
chr3 (16-221)||(1307033-1307238)
chr3 (15-179)||(6793628-6793792)
chr3 (15-221)||(2675940-2676146)
chr3 (11-169)||(3327260-3327418)
chr3 (16-221)||(8513256-8513461)
chr3 (15-221)||(32476501-32476707)
chr3 (153-221)||(4386095-4386163)
[»] chr5 (9 HSPs)
chr5 (15-221)||(28806442-28806648)
chr5 (15-221)||(28833220-28833426)
chr5 (15-221)||(43593282-43593488)
chr5 (15-221)||(43626076-43626282)
chr5 (15-221)||(27445984-27446190)
chr5 (15-221)||(33769200-33769406)
chr5 (15-221)||(37560313-37560519)
chr5 (11-221)||(31400712-31400922)
chr5 (17-146)||(22828227-22828356)
[»] scaffold0259 (1 HSPs)
scaffold0259 (15-221)||(1105-1311)
[»] scaffold0197 (2 HSPs)
scaffold0197 (15-221)||(13150-13356)
scaffold0197 (15-221)||(18029-18235)
[»] chr1 (5 HSPs)
chr1 (15-221)||(19360278-19360484)
chr1 (15-221)||(13599404-13599610)
chr1 (11-179)||(47101769-47101937)
chr1 (15-221)||(41391613-41391819)
chr1 (15-217)||(47702760-47702962)
[»] scaffold0006 (2 HSPs)
scaffold0006 (15-221)||(6689-6895)
scaffold0006 (15-221)||(7201-7407)
[»] chr2 (4 HSPs)
chr2 (15-122)||(31057119-31057226)
chr2 (15-221)||(19345438-19345645)
chr2 (11-98)||(39483923-39484010)
chr2 (153-217)||(39484056-39484120)
[»] scaffold0078 (1 HSPs)
scaffold0078 (11-121)||(33197-33307)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 30517243 - 30516999
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| || |||||||||||||||||||||    
T  30517243 cacaaattgttgatttgctttccaactaatagccgtgccataaaggataaacaaaaaataagatagagattttct-gtatccacattgtccgtatagtcc 30517145  T
Q  111 gcatctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttca 210  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30517144 gcatctacatacgcctgtcaagcattttcatcttgacatgcccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttca 30517045  T
Q  211 aaacttgccaaagaataattttcgaatttgcca-ataccgacttac 255  Q
    || |||||||| ||||||||| |  |||||||| |||| |||||||    
T  30517044 aagcttgccaatgaataatttccagatttgccatatactgacttac 30516999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 24713954 - 24714160
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||  ||||  ||||||||||||||||||||  ||| |||||||||||    
T  24713954 gattgttgatttgccttccaactaatagtcgtgccataaagagtaaacacaaaactcgataaggattttcttgtgtccacattacccgcatagtccgcat 24714053  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    |||||||| | |   || | | ||| ||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| |    
T  24714054 ctacatacccctccaaaacgtcttcctcttgagctgctcttgtgtacttcaaacctcccttcaaagacccattcaaatacctcaatacccacttcaaagc 24714153  T
Q  215 ttgccaa 221  Q
    |||||||    
T  24714154 ttgccaa 24714160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 33335002 - 33334796
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| || ||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  33335002 gattgttgatttgccttccaactaatcgctgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 33334903  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  |||| || ||||||||| |    
T  33334902 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaacacccacttcaaagc 33334803  T
Q  215 ttgccaa 221  Q
    |||||||    
T  33334802 ttgccaa 33334796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 14741497 - 14741319
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  14741497 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 14741398  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaata 193  Q
    | |||||| | |   |||  | ||||||||||  | ||||| |||||||||||||  |||||||   ||||||||||||    
T  14741397 caacatacccctccaaagtgtcttcatcttgagctgcccttatgtacttcaaaccgcccttcaacgacccattcaaata 14741319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 24434998 - 24434802
Alignment:
Q  16 attgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcatc 115  Q
    ||||||||||||| |||||||||||||  ||||||||||| ||||||| |||||  ||||   ||||||||||||||||||||         ||||||||    
T  24434998 attgttgatttgccttccaactaatagttgtgccataaagagtaaacacaaaacccgataagtattttcttgtgtccacattg---------tccgcatc 24434908  T
Q  116 tacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaact 215  Q
    ||||||| ||||  |||| | ||| ||||||  | | |||||||||||||||||  ||||||||  || |||||||||  |||| || ||||||||| ||    
T  24434907 tacatacccttgcaaagcgtcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagaccgattcaaatacctcaacacccacttcaaagct 24434808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 18869596 - 18869390
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  |||||||| |||||||||||| ||| |||||||||||    
T  18869596 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacattgcccgcatagtccgcat 18869497  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   | || | ||||||||||  | |||||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| |    
T  18869496 caacatacccctccaatgcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaatacccacttcaaagc 18869397  T
Q  215 ttgccaa 221  Q
    |||||||    
T  18869396 ttgccaa 18869390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 19751462 - 19751256
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  ||||||||||||||||||||| ||| |||||||||||    
T  19751462 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttcttgtgtccacattgcccgcatagtccgcat 19751363  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||  ||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| |    
T  19751362 caacatacccctccaaagcgtctttctcttgagctgctcttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaacacccacttcaaagc 19751263  T
Q  215 ttgccaa 221  Q
    |||||||    
T  19751262 ttgccaa 19751256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 26402275 - 26402069
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    ||||||||||| || ||||||||||||| ||||||||| || ||||||| |||||  ||||||||||||||||||||||||||| |||||||||||||||    
T  26402275 gattgttgattagccttccaactaatagtcgtgccatatagagtaaacacaaaacccgatagagattttcttgtgtccacattgcccgtatagtccgcat 26402176  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||| ||||||  | | |||||||||||||||||   |||||||   |||||||||||  |||| || ||||||||| |    
T  26402175 caacatacccctccaaagcgtcttcctcttgagctgctcttgtgtacttcaaaccgctcttcaaagatccattcaaatacctcaacacccacttcaaagc 26402076  T
Q  215 ttgccaa 221  Q
    |||||||    
T  26402075 ttgccaa 26402069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 10688190 - 10687984
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  10688190 gattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 10688091  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  10688090 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 10687991  T
Q  215 ttgccaa 221  Q
    |||||||    
T  10687990 ttgccaa 10687984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 33036859 - 33036653
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |   |||  |||||||| |||||||||||  ||| |||||||||||    
T  33036859 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaatcccaataaggattttctagtgtccacatttcccgcatagtccgcat 33036760  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| |    
T  33036759 caacatacccctccaaagcgtcttcatcttgagctgctcttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaatacccacttcaaagc 33036660  T
Q  215 ttgccaa 221  Q
    |||||||    
T  33036659 ttgccaa 33036653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 34587136 - 34587342
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||| ||||||||| || ||||||| |||||  ||||||||||||||||||||||||||| ||| |||||| ||||    
T  34587136 gattgttgatttgccttccaactaatagtcgtgccatagagagtaaacacaaaacccgatagagattttcttgtgtccacattgcccgcatagtctgcat 34587235  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||| ||||||  | |  |||||||||||||||    |||||||  | |||||||||| ||||| || ||||||||| |    
T  34587236 caacatacccctccaaagcgtcttcctcttgagctgcttttgtgtacttcaaactgctcttcaaagactcattcaaatacttcaacacccacttcaaagc 34587335  T
Q  215 ttgccaa 221  Q
    |||||||    
T  34587336 ttgccaa 34587342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 35741550 - 35741756
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||  ||| ||| |||||||    
T  35741550 gattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgtttcccgcataatccgcat 35741649  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  35741650 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 35741749  T
Q  215 ttgccaa 221  Q
    |||||||    
T  35741750 ttgccaa 35741756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 26297544 - 26297749
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||  ||||  |||||||| |||||||||||| ||| ||||| |||||    
T  26297544 gattgttgatttgctt-ccaactaatagtcgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacattgcccgcatagttcgcat 26297642  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||| ||||||  |   |||||||||||||||||  ||||||||  | ||||||||||  |||| || ||||||||| |    
T  26297643 caacatacccctccaaagcgtcttcctcttgagctgatcttgtgtacttcaaaccgcccttcaaagactcattcaaatacctcaatacccacttcaaagc 26297742  T
Q  215 ttgccaa 221  Q
    |||||||    
T  26297743 ttgccaa 26297749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 26310801 - 26311006
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||  ||||  |||||||| |||||||||||| ||| ||||| |||||    
T  26310801 gattgttgatttgctt-ccaactaatagtcgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacattgcccgcatagttcgcat 26310899  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||| ||||||  |   |||||||||||||||||  ||||||||  | ||||||||||  |||| || ||||||||| |    
T  26310900 caacatacccctccaaagcgtcttcctcttgagctgatcttgtgtacttcaaaccgcccttcaaagactcattcaaatacctcaatacccacttcaaagc 26310999  T
Q  215 ttgccaa 221  Q
    |||||||    
T  26311000 ttgccaa 26311006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 9228262 - 9228052
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  |||||||| |||||||| ||| ||| ||| |||    
T  9228262 cacagattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacgttgcccgcataatcc 9228163  T
Q  111 gcatctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttca 210  Q
    ||||| |||||| | |   |||| | ||||||||||  | |||||||||||||||||||| |||||||   ||||||||||||  |||| || |||||||    
T  9228162 gcatcaacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccacccttcaaggacccattcaaatacctcaatacccacttca 9228063  T
Q  211 aaacttgccaa 221  Q
    || ||||||||    
T  9228062 aagcttgccaa 9228052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 16627918 - 16627712
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||||| ||||||| || | |||||||||||  | ||||||||||||||||||||||||| ||| |||||| ||||    
T  16627918 gattgttgatttgccttccaactaatagccatgccatagagagaaaacaaaaaacccggtagagattttcttgtgtccacattgcccgcatagtctgcat 16627819  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||||| ||| ||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| |    
T  16627818 caacatacccctccaaagcatcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaacacccacttcaaagc 16627719  T
Q  215 ttgccaa 221  Q
    |||||||    
T  16627718 ttgccaa 16627712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 3792062 - 3791852
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    ||||||||||||||| || ||||||||||||| ||||||||| || ||| ||| |||||  ||||||||||||||||||||||||||  ||| |||||||    
T  3792062 cacagattgttgattagccttccaactaatagtcgtgccatagagagtagacacaaaacccgatagagattttcttgtgtccacattacccgcatagtcc 3791963  T
Q  111 gcatctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttca 210  Q
    ||||| |||||| | |   |||| | ||| ||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || |||||||    
T  3791962 gcatcaacatacccctccaaagcgtcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaacacccacttca 3791863  T
Q  211 aaacttgccaa 221  Q
    || ||||||||    
T  3791862 aagcttgccaa 3791852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 18856737 - 18856943
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| | |||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  18856737 gattgttgatttgccttccaactaattgtcgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 18856836  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  18856837 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 18856936  T
Q  215 ttgccaa 221  Q
    |||||||    
T  18856937 ttgccaa 18856943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 5144138 - 5144188
Alignment:
Q  72 gatagagattttcttgtgtccacattgtccgtatagtccgcatctacatac 122  Q
    ||||||||||||||||||||||||||  ||| |||||||||||| ||||||    
T  5144138 gatagagattttcttgtgtccacattacccgcatagtccgcatcaacatac 5144188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 5144209 - 5144277
Alignment:
Q  153 cttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaacttgccaa 221  Q
    |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| ||||||||    
T  5144209 cttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaacacccacttcaaagcttgccaa 5144277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 9189071 - 9188865
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  ||||||||||||||||||||| ||| |||||||||||    
T  9189071 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttcttgtgtccacattgcccgcatagtccgcat 9188972  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||  ||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| |    
T  9188971 caacatacccctcaaaagcgtctttctcttgagctgctcttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaacacccacttcaaagc 9188872  T
Q  215 ttgccaa 221  Q
    |||||||    
T  9188871 ttgccaa 9188865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 21984290 - 21984500
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    |||||||||||||||||| ||||||||||||| ||||||||| || ||||||| |||||  ||||||||||||||||||||||||||  ||| ||||| |    
T  21984290 cacagattgttgatttgccttccaactaatagtcgtgccatagagagtaaacacaaaacccgatagagattttcttgtgtccacattacccgcatagttc 21984389  T
Q  111 gcatctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttca 210  Q
    ||||| |||||| | |   |||| | ||| ||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || |||||||    
T  21984390 gcatcaacatacccctccaaagcgtcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaacacccacttca 21984489  T
Q  211 aaacttgccaa 221  Q
    || ||||||||    
T  21984490 aagcttgccaa 21984500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 21640851 - 21641057
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  21640851 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 21640950  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  21640951 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 21641050  T
Q  215 ttgccaa 221  Q
    |||||||    
T  21641051 ttgccaa 21641057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 24265249 - 24265043
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  24265249 gattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 24265150  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  24265149 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 24265050  T
Q  215 ttgccaa 221  Q
    |||||||    
T  24265049 ttgccaa 24265043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 12397917 - 12398122
Alignment:
Q  16 attgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcatc 115  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  || |  ||||| || ||||| || ||| ||| ||| ||||||||    
T  12397917 attgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgacaaggatttcctagtgtctactttgcccgcataatccgcatc 12398016  T
Q  116 tacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaact 215  Q
     |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| ||    
T  12398017 aacatacccctccaaagcgtcttcatcttgagttgcccttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaatacccacttcaaagct 12398116  T
Q  216 tgccaa 221  Q
    ||||||    
T  12398117 tgccaa 12398122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 16881088 - 16881294
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  ||||| || |||||||||||| ||| ||| |||||||    
T  16881088 gattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggatttcctagtgtccacattgcccgcataatccgcat 16881187  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||| ||  |||| || ||||||||| |    
T  16881188 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaagtacctcaacacccacttcaaagc 16881287  T
Q  215 ttgccaa 221  Q
    |||||||    
T  16881288 ttgccaa 16881294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 24273831 - 24273629
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||  |||||||| || ||||||| |||||  ||||||||||||||||||||||||||  ||| |||||||||||    
T  24273831 gattgttgatttgccttccaactaatagttgtgccatagagagtaaacataaaacccgatagagattttcttgtgtccacatttcccgcatagtccgcat 24273732  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
      |||||| | |   |||| | ||| ||||||  | | |||||||||||||||||  ||||| ||  ||||||||||||  |||| || ||||||||| |    
T  24273731 taacatacccctccaaagcgtcttcctcttgagctgctcttgtgtacttcaaaccgcccttctaagacccattcaaatacctcaatacccacttcaaagc 24273632  T
Q  215 ttg 217  Q
    |||    
T  24273631 ttg 24273629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 18409827 - 18409910
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattg 98  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  |||||||| ||||||||||||    
T  18409827 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacattg 18409910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 18409956 - 18410024
Alignment:
Q  153 cttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaacttgccaa 221  Q
    |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| ||||||||    
T  18409956 cttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaacacccacttcaaagcttgccaa 18410024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 22172238 - 22172028
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  |||||||| |||||||| ||| | | ||| |||    
T  22172238 cacagattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacgttgcctgcataatcc 22172139  T
Q  111 gcatctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttca 210  Q
    ||||| |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  ||||||||  ||||||||||||  |||| || |||||||    
T  22172138 gcatcaacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaatacccacttca 22172039  T
Q  211 aaacttgccaa 221  Q
    || ||||||||    
T  22172038 aagcttgccaa 22172028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 1307033 - 1307238
Alignment:
Q  16 attgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcatc 115  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||  ||||  |||||||| |||||||||||| ||| ||||||||||||    
T  1307033 attgttgatttgccttccaactaatagtcgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacattgcccgcatagtccgcatc 1307132  T
Q  116 tacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaact 215  Q
     |||||| | |   |||| | ||| ||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| ||    
T  1307133 aacatacccctccaaagcgtcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaatacccacttcaaagct 1307232  T
Q  216 tgccaa 221  Q
    ||||||    
T  1307233 tgccaa 1307238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 6793792 - 6793628
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||||| || ||||||| ||||||| |||||  ||||  ||||||||||||||||||||| ||| |||||||||||    
T  6793792 gattgttgatttgccttccaactaatagccttgtcataaagagtaaacacaaaacccgataaggattttcttgtgtccacattgcccgcatagtccgcat 6793693  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaa 179  Q
    |||||||| | |   |||| | ||||||| ||  | | |||||||||||||||||  ||||||||    
T  6793692 ctacatacccctccaaagcgtcttcatctcgatctgctcttgtgtacttcaaaccgcccttcaaa 6793628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 2676146 - 2675940
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| || ||||  ||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  2676146 gattgttgatttgccttccaactaatcgccgtgccataaagagtgaacacgaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 2676047  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  | |||||   ||||||||||||  ||||||| ||||||||| |    
T  2676046 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcctttcaacgacccattcaaatacctcaaaacccacttcaaagc 2675947  T
Q  215 ttgccaa 221  Q
    |||||||    
T  2675946 ttgccaa 2675940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 3327418 - 3327260
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    |||||||| || |||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  ||||||||  ||||||||||| ||| ||||||     
T  3327418 cacagattttttatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttctcatgtccacattgcccgcatagtct 3327319  T
Q  111 gcatctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaacc 169  Q
    |||||||||||| | |   |||||| ||| ||||||  | | |||||||||||||||||    
T  3327318 gcatctacatacccctccaaagcatcttcctcttgagctgctcttgtgtacttcaaacc 3327260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 8513256 - 8513461
Alignment:
Q  16 attgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcatc 115  Q
    ||||||||||||| ||||||||||| ||||||||||| || ||||||| |||||  || |  ||||| || ||||| || ||| ||| ||| ||||||||    
T  8513256 attgttgatttgccttccaactaatcgccgtgccatagagagtaaacacaaaacccgacaaggatttcctagtgtctacgttgcccgcataatccgcatc 8513355  T
Q  116 tacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaact 215  Q
     |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| ||    
T  8513356 aacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagct 8513455  T
Q  216 tgccaa 221  Q
    ||||||    
T  8513456 tgccaa 8513461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 32476501 - 32476707
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  ||||| || ||||| || ||| ||| ||| |||||||    
T  32476501 gattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggatttcctagtgtctacgttgcccgcataatccgcat 32476600  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  ||  |||   ||||||||||||  ||||||| ||||||||| |    
T  32476601 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccaccaacgacccattcaaatacctcaaaacccacttcaaagc 32476700  T
Q  215 ttgccaa 221  Q
    |||||||    
T  32476701 ttgccaa 32476707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 4386163 - 4386095
Alignment:
Q  153 cttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaacttgccaa 221  Q
    ||||||||| |||||||| ||||||||  ||||||||||||  |||| || ||||||||| ||||||||    
T  4386163 cttgtgtacctcaaaccacccttcaaagacccattcaaatacctcaacacccacttcaaagcttgccaa 4386095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 28806648 - 28806442
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| ||||||||||| || ||||||| |||||  || |  |||||||| |||||||||||| ||| ||| |||||||    
T  28806648 gattgttgatttgccttccaactaatcgccgtgccatagagagtaaacacaaaacccgacaaggattttctagtgtccacattgcccgcataatccgcat 28806549  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||||| ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  28806548 caacatacccctccaaagcatcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 28806449  T
Q  215 ttgccaa 221  Q
    |||||||    
T  28806448 ttgccaa 28806442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 28833220 - 28833426
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||| |||||   |||  ||||||||||||||||||||| ||| |||||||||||    
T  28833220 gattgttgatttgccttccaactaatagccgttccataaagagtaaacacaaaactcaataaggattttcttgtgtccacattgcccgcatagtccgcat 28833319  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    |||||||| | |   |||  | ||||||||||  | | |||||||||||||||||  ||||||||   |||||||||||  |||| || ||||||||| |    
T  28833320 ctacatacccctccaaagtgtcttcatcttgagctgctcttgtgtacttcaaaccgcccttcaaagatccattcaaatacctcaacacccacttcaaagc 28833419  T
Q  215 ttgccaa 221  Q
    |||||||    
T  28833420 ttgccaa 28833426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 43593282 - 43593488
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  |||||||| |||||||||||| ||| ||| |||||||    
T  43593282 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacattgcccgcataatccgcat 43593381  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  |||| || ||||||||  |    
T  43593382 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaatacccacttcaaggc 43593481  T
Q  215 ttgccaa 221  Q
    |||||||    
T  43593482 ttgccaa 43593488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 43626076 - 43626282
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  |||||||| |||||||||||| ||| ||| |||||||    
T  43626076 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacattgcccgcataatccgcat 43626175  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  |||| || ||||||||  |    
T  43626176 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaatacccacttcaaggc 43626275  T
Q  215 ttgccaa 221  Q
    |||||||    
T  43626276 ttgccaa 43626282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 27445984 - 27446190
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  ||||  |||||||| |||||||||||| | | ||| |||||||    
T  27445984 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaacccgataaggattttctagtgtccacattgccagcataatccgcat 27446083  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  |||| || ||||||||  |    
T  27446084 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaatacccacttcaaggc 27446183  T
Q  215 ttgccaa 221  Q
    |||||||    
T  27446184 ttgccaa 27446190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 33769200 - 33769406
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  ||||| || |||||||| ||| ||| ||| |||||||    
T  33769200 gattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggatttgctagtgtccacgttgcccgcataatccgcat 33769299  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  33769300 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 33769399  T
Q  215 ttgccaa 221  Q
    |||||||    
T  33769400 ttgccaa 33769406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 37560519 - 37560313
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| | |||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  37560519 gattgttgatttgccttccaactaatcgtcgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 37560420  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  37560419 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 37560320  T
Q  215 ttgccaa 221  Q
    |||||||    
T  37560319 ttgccaa 37560313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 31400922 - 31400712
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  |||||||| ||||| || ||| ||| ||| |||    
T  31400922 cacagattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtctacgttgcccgcataatcc 31400823  T
Q  111 gcatctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttca 210  Q
    |||||  ||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   | ||||||||||  ||||||| |||||||    
T  31400822 gcatcagcatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacacattcaaatacctcaaaacccacttca 31400723  T
Q  211 aaacttgccaa 221  Q
    || ||||||||    
T  31400722 aagcttgccaa 31400712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 22828356 - 22828227
Alignment:
Q  17 ttgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcatct 116  Q
    |||||||||| | ||||| |||||||  |||||||| |  ||||||  |||||   ||| |||||||||| ||||||||||| ||| ||||| ||||| |    
T  22828356 ttgttgatttaccttccagctaatagttgtgccatataaagtaaactcaaaacccaataaagattttcttatgtccacattgcccgcatagttcgcattt 22828257  T
Q  117 acatacgcttgtcaagcattttcatcttga 146  Q
    |||||| |||   |||||| ||||||||||    
T  22828256 acatacccttccaaagcatcttcatcttga 22828227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 1311 - 1105
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||  || |  ||||| || |||||||| ||| ||| ||| |||||||    
T  1311 gattgttgatttgccttccaactaatagccgtgccataaagtgtaaacacaaaacccgacaaggatttcctagtgtccacgttgcccgcataatccgcat 1212  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  1211 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 1112  T
Q  215 ttgccaa 221  Q
    |||||||    
T  1111 ttgccaa 1105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 13356 - 13150
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  13356 gattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 13257  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  13256 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 13157  T
Q  215 ttgccaa 221  Q
    |||||||    
T  13156 ttgccaa 13150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 18235 - 18029
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  18235 gattgttgatttgccttccaactaatcgccgtgccataaagagtaaacacaaaacccgacaaggattttctagtgtccacgttgcccgcataatccgcat 18136  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| ||||||||| |    
T  18135 caacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaagc 18036  T
Q  215 ttgccaa 221  Q
    |||||||    
T  18035 ttgccaa 18029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 19360484 - 19360278
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||   |||  |||||||| |||||||||||| ||| |||||| ||||    
T  19360484 gattgttgatttgccttccaactaatagccgtgccataaagagtaaacacaaaactcaataaggattttctagtgtccacattgcccgcatagtctgcat 19360385  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   ||| || ||| ||||||  | | |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| |    
T  19360384 caacatacccctccaaagaatcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaatacccacttcaaagc 19360285  T
Q  215 ttgccaa 221  Q
    |||||||    
T  19360284 ttgccaa 19360278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 13599404 - 13599610
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||| ||||||||| || ||||||| |||||  |||| |||||||||||||||||||||  ||| |||||| ||||    
T  13599404 gattgttgatttgccttccaactaatagtcgtgccatatagagtaaacacaaaacccgataaagattttcttgtgtccacattacccgcatagtctgcat 13599503  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   | |||| ||| ||||||  | | |||||||||||||||||  ||||||||   |||||||||||  |||| || ||||||||| |    
T  13599504 caacatacccctccaaggcatcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagagccattcaaatacctcaacacccacttcaaagc 13599603  T
Q  215 ttgccaa 221  Q
    |||||||    
T  13599604 ttgccaa 13599610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 47101937 - 47101769
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    ||||||||||||||| || |||||||||||||||||| |||| || ||||||| ||| |   |||||||||||||||||||||||||| ||| |||||||    
T  47101937 cacagattgttgattagccttccaactaatagccgtgtcatagagagtaaacacaaaccccaatagagattttcttgtgtccacattgcccgcatagtcc 47101838  T
Q  111 gcatctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaa 179  Q
    ||||| |||||| | |   || ||| ||||||||||  | | |||||||||||||||||  ||||||||    
T  47101837 gcatcaacatacccctccaaaacatcttcatcttgagctgctcttgtgtacttcaaaccgcccttcaaa 47101769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 41391613 - 41391819
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||| ||||||||||||  |||||| |||||  || |  |||||||| |||||||| ||| ||| ||| |||||||    
T  41391613 gattgttgatttgccttccaactaatagtcgtgccataaagaataaacacaaaacccgacaaggattttctggtgtccacgttgcccgcataatccgcat 41391712  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  |||| || ||||||||| |    
T  41391713 caacatacccctccaaagcgtcttcatcttgagttgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaatacccacttcaaagc 41391812  T
Q  215 ttgccaa 221  Q
    |||||||    
T  41391813 ttgccaa 41391819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 47702962 - 47702760
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    ||||||||||| || ||| ||||||||| ||||||||| || ||||||| |||||  ||||||||||||||||||||||||||| ||| |||||||||||    
T  47702962 gattgttgattagccttcaaactaatagtcgtgccatagagagtaaacacaaaacccgatagagattttcttgtgtccacattgcccgcatagtccgcat 47702863  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   |||  | ||| ||||||  | | |||||||||||||||||  ||||| ||  ||||||||||||  |||| || ||||||||| |    
T  47702862 caacatacccctccaaagtgtcttcctcttgagctgctcttgtgtacttcaaaccgcccttcgaagacccattcaaatacctcaacacccacttcaaagc 47702763  T
Q  215 ttg 217  Q
    |||    
T  47702762 ttg 47702760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 6689 - 6895
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||| ||||||||| || ||||||| |||||  |||| |||||||||||||||||||||  ||| |||||| ||||    
T  6689 gattgttgatttgccttccaactaatagtcgtgccatatagagtaaacacaaaacccgataaagattttcttgtgtccacattacccgcatagtctgcat 6788  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   | |||| ||| ||||||  | | |||||||||||||||||  ||||||||   |||||||||||  |||| || ||||||||| |    
T  6789 caacatacccctccaaggcatcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagagccattcaaatacctcaacacccacttcaaagc 6888  T
Q  215 ttgccaa 221  Q
    |||||||    
T  6889 ttgccaa 6895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 7201 - 7407
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    |||||||||||||| ||||||||||||| ||||||||| || ||||||| |||||  |||| |||||||||||||||||||||  ||| |||||| ||||    
T  7201 gattgttgatttgccttccaactaatagtcgtgccatatagagtaaacacaaaacccgataaagattttcttgtgtccacattacccgcatagtctgcat 7300  T
Q  115 ctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaac 214  Q
    | |||||| | |   | |||| ||| ||||||  | | |||||||||||||||||  ||||||||   |||||||||||  |||| || ||||||||| |    
T  7301 caacatacccctccaaggcatcttcctcttgagctgctcttgtgtacttcaaaccgcccttcaaagagccattcaaatacctcaacacccacttcaaagc 7400  T
Q  215 ttgccaa 221  Q
    |||||||    
T  7401 ttgccaa 7407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 31057119 - 31057226
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtccgcat 114  Q
    ||||||||||| || || |||||||||||||||||||| || ||||||| |||||  ||||||||||||||||||||||||||| ||| |||||||||||    
T  31057119 gattgttgattagcctttcaactaatagccgtgccatagagagtaaacacaaaacccgatagagattttcttgtgtccacattgcccgcatagtccgcat 31057218  T
Q  115 ctacatac 122  Q
    | ||||||    
T  31057219 caacatac 31057226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 19345438 - 19345645
Alignment:
Q  15 gattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagata-gagattttcttgtgtccacattgtccgtatagtccgca 113  Q
    |||||||||||||| ||||||||||| | ||||| |||||| ||||||| |||||  || | | |||||||| |||||||| ||| ||| ||| ||||||    
T  19345438 gattgttgatttgccttccaactaatcgtcgtgctataaagagtaaacacaaaacccgacaagggattttctagtgtccacgttgcccgcataatccgca 19345537  T
Q  114 tctacatacgcttgtcaagcattttcatcttgacatacccttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaa 213  Q
    || |||||| | |   |||| | ||||||||||  | |||||||||||||||||||  |||||||   ||||||||||||  ||||||| |||||||||     
T  19345538 tcaacatacccctccaaagcgtcttcatcttgagctgcccttgtgtacttcaaaccgcccttcaacgacccattcaaatacctcaaaacccacttcaaag 19345637  T
Q  214 cttgccaa 221  Q
    ||||||||    
T  19345638 cttgccaa 19345645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 39483923 - 39484010
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattg 98  Q
    |||||||||||||||||  |||||||||||||  | |||||| ||  |||||| |||||  |||||||||||||||||||||||||||    
T  39483923 cacagattgttgatttgtcttccaactaatagttgagccatagagaataaacacaaaacccgatagagattttcttgtgtccacattg 39484010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 39484056 - 39484120
Alignment:
Q  153 cttgtgtacttcaaaccatccttcaaaatcccattcaaatatttcaaaacgcacttcaaaacttg 217  Q
    |||||||||||||||||  ||||||||  ||||||||||||  |||| || ||||||||| ||||    
T  39484056 cttgtgtacttcaaaccgcccttcaaagacccattcaaatacctcaacacccacttcaaagcttg 39484120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 33197 - 33307
Alignment:
Q  11 cacagattgttgatttgctttccaactaatagccgtgccataaagggtaaacaaaaaacgagatagagattttcttgtgtccacattgtccgtatagtcc 110  Q
    |||||||||||||||||  ||||||||||||  ||||||| |||| ||||||| |||||  |||| |||||||||||||||||  ||| ||| |||||||    
T  33197 cacagattgttgatttgtcttccaactaataatcgtgccaaaaagagtaaacacaaaacccgataaagattttcttgtgtccatgttgcccgcatagtcc 33296  T
Q  111 gcatctacata 121  Q
    |||||||||||    
T  33297 gcatctacata 33307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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