View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_46 (Length: 253)
Name: NF15036_low_46
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 37807613 - 37807401
Alignment:
| Q |
18 |
gtcttactcctaccaattcttagtatgagtgccgttagatctatagtatataataatcttagagagaacaatcgaagcacagagagacatatatcttcta |
117 |
Q |
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| T |
37807613 |
gtcttactcctaccaattcttagtatgagtgccgttagatctata---tataataatcttagagagaacaatcgaagcacagagagacatatatcatcta |
37807517 |
T |
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| Q |
118 |
tatgtctaatgtctataagtagtacgtatctcctcttctgagttactcactcacgnnnnnnnatgaaagaaaaattaaaaacactaaaatcaatgaattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37807516 |
tatgtctaatgtctataagtagtacgtatctcctcttgtgagttactcactcacgtttttttatgaaagaaaaattaaaaacactaaaatcaatgaattt |
37807417 |
T |
|
| Q |
218 |
atttgaaaatactcct |
233 |
Q |
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|||||||||||||||| |
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| T |
37807416 |
atttgaaaatactcct |
37807401 |
T |
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