View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15036_low_49 (Length: 238)
Name: NF15036_low_49
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 15180121 - 15180002
Alignment:
| Q |
1 |
gtactttggaacttgatgcacacaactcaacaaggtatctatcagttggaaatgtattggaagctcttaaggttcctccttttaccttcaaacattttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15180121 |
gtactttggaacttgatgcacacaactcaacaaggtatctatcagttggaaatgtattggaagctcttaaggttcctccttttaccttcaaacatttcat |
15180022 |
T |
|
| Q |
101 |
gtacaagttaagtgtaaaaa |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15180021 |
gtacaagttaagtgtaaaaa |
15180002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 15179937 - 15179884
Alignment:
| Q |
171 |
ttgttcattttccaacacaattgctagccagacattttggtcaaggctttagtg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15179937 |
ttgttcattttccaacacaattgctagccagacattttggtcaaggcttaagtg |
15179884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University