View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_51 (Length: 216)
Name: NF15036_low_51
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_51 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 42135232 - 42135447
Alignment:
| Q |
1 |
ctcttcccaatggtaattccatatatgttcatgatgctattaatgtatattttactcctcatttgtacctgaatcatgttctgtattctcctgaattcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42135232 |
ctcttcccaatggtaattccatatatgttcattatgctggtaatgtatattttactcctcatttgtacctaaatcatgttctgtattctcctgaattcaa |
42135331 |
T |
|
| Q |
101 |
agtcaacttaatttctgtttccaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacaggatgtgacatcacagaag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42135332 |
agtcaacttaatttctgtttccaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacaggatgtgacatcacagaag |
42135431 |
T |
|
| Q |
201 |
atgattgatttgggtg |
216 |
Q |
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||||||| |||||||| |
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| T |
42135432 |
atgattggtttgggtg |
42135447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 26471506 - 26471550
Alignment:
| Q |
171 |
tgtgttatacaggatgtgacatcacagaagatgattgatttgggt |
215 |
Q |
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||||| ||||||||||||| | ||||||||||||||| ||||||| |
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| T |
26471506 |
tgtgtgatacaggatgtgaaaacacagaagatgattggtttgggt |
26471550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 21030508 - 21030293
Alignment:
| Q |
1 |
ctcttcccaatggtaattccatatatgttcatgatgctattaatgtatattttactcctcatttgtacctgaatcatgttctgtattctcctgaattcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21030508 |
ctcttcccaatggtaattccatatatgttcattatgctggtaatgtatattttactcctcatttgtacctaaatcatgttctgtattctcctgaattcaa |
21030409 |
T |
|
| Q |
101 |
agtcaacttaatttctgtttccaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacaggatgtgacatcacagaag |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21030408 |
agtcaacttaatttctgttttcaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacaggatgtgacatcacagaag |
21030309 |
T |
|
| Q |
201 |
atgattgatttgggtg |
216 |
Q |
| |
|
||||||| |||||||| |
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| T |
21030308 |
atgattggtttgggtg |
21030293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 28520589 - 28520374
Alignment:
| Q |
1 |
ctcttcccaatggtaattccatatatgttcatgatgctattaatgtatattttactcctcatttgtacctgaatcatgttctgtattctcctgaattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
28520589 |
ctcttcccaatggtaattccatatatgttcattatgctggtaatgtatattttactcctcatttgtacctgaatcatgttttgtattctcttgaattcaa |
28520490 |
T |
|
| Q |
101 |
agtcaacttaatttctgtttccaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacaggatgtgacatcacagaag |
200 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
28520489 |
agtcaacttagtttctgtttccaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacatgatgtgacatcacaaaag |
28520390 |
T |
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| Q |
201 |
atgattgatttgggtg |
216 |
Q |
| |
|
||||||| |||||||| |
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| T |
28520389 |
atgattggtttgggtg |
28520374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 18482535 - 18482320
Alignment:
| Q |
1 |
ctcttcccaatggtaattccatatatgttcatgatgctattaatgtatattttactcctcatttgtacctgaatcatgttctgtattctcctgaattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
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| T |
18482535 |
ctcttcccaatggtaattccatatatgttcattatgctggtaatgtatattttactcctcatttgtacctaaataatgttctgtattctcttgaattcaa |
18482436 |
T |
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| Q |
101 |
agtcaacttaatttctgtttccaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacaggatgtgacatcacagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
18482435 |
agtcaacttaatttctgtttccaaaatgtgtgattccttatcttgtagtggcaatttcgtttcgaataaatgtgttatacaggatgtgacatcacataag |
18482336 |
T |
|
| Q |
201 |
atgattgatttgggtg |
216 |
Q |
| |
|
||||||| |||||||| |
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| T |
18482335 |
atgattggtttgggtg |
18482320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38848192 - 38847977
Alignment:
| Q |
1 |
ctcttcccaatggtaattccatatatgttcatgatgctattaatgtatattttactcctcatttgtacctgaatcatgttctgtattctcctgaattcaa |
100 |
Q |
| |
|
||||||| ||||||| ||| || ||||| ||| ||||| |||||| ||||||||||| || | | ||| ||||||| ||||||| ||||| ||||| |
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| T |
38848192 |
ctcttcctaatggtacttcaatttatgtgcattatgctggcaatgtacattttactccttatcttcatttgactcatgttttgtattcccctgagttcaa |
38848093 |
T |
|
| Q |
101 |
agtcaacttaatttctgtttccaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacaggatgtgacatcacagaag |
200 |
Q |
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|
||| || || ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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|
| T |
38848092 |
agttaatttgatttctgtttccaaaatttgtgattctttatcttgcagtgtcaattttgtttctaataaatgtgttatacaggatgtgacatctcagagg |
38847993 |
T |
|
| Q |
201 |
atgattgatttgggtg |
216 |
Q |
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|
||||||| |||||||| |
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| T |
38847992 |
atgattggtttgggtg |
38847977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 17481452 - 17481324
Alignment:
| Q |
87 |
tctcctgaattcaaagtcaacttaatttctgtttccaaaatgtgtgattccttatcttgtagtgtcaattttgtttctaataaatgtgttatacaggatg |
186 |
Q |
| |
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||||||||||||||| |||| || || | ||| |||||||||||||| || ||||| |||||| | |||||| | ||||| || || |||||||||||| |
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| T |
17481452 |
tctcctgaattcaaattcaatttgatatatgtctccaaaatgtgtgagtcattatcctgtagttt-aattttatctctaagaagtgcattatacaggatg |
17481354 |
T |
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| Q |
187 |
tgacatcacagaagatgattgatttgggtg |
216 |
Q |
| |
|
||||||||| || |||||||| |||||||| |
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|
| T |
17481353 |
tgacatcacggaggatgattggtttgggtg |
17481324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 8835606 - 8835650
Alignment:
| Q |
171 |
tgtgttatacaggatgtgacatcacagaagatgattgatttgggt |
215 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
8835606 |
tgtgtgatacaggatgtgaaaacacagaagatgattggtttgggt |
8835650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 55309541 - 55309585
Alignment:
| Q |
171 |
tgtgttatacaggatgtgacatcacagaagatgattgatttgggt |
215 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
55309541 |
tgtgtgatacaggatgtgaaaacacagaagatgattggtttgggt |
55309585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 2160 - 2199
Alignment:
| Q |
177 |
atacaggatgtgacatcacagaagatgattgatttgggtg |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
2160 |
atacaggatgtgaaatcacagaagatgattggtttgggtg |
2199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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