View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_53 (Length: 209)
Name: NF15036_low_53
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 28602341 - 28602143
Alignment:
| Q |
1 |
tatattcatacagaataatctacaactaccaactacaaaccactatggcccccaaactctctcaattaatccaatgnnnnnnnctactnnnnnnngcatc |
100 |
Q |
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| T |
28602341 |
tatattcatacagaataatctacaactaccaactacaaaccactatggcccccaaactctctcaattaatccaatgtttttttctactaaaaaaagcatc |
28602242 |
T |
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| Q |
101 |
tttgattgacaaaataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagatactgaaaatgactttcccatgcattttaatcctttg |
199 |
Q |
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| T |
28602241 |
tttgattgacaaaataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagatactgaaaatgactttcccatgcattttaatcctttg |
28602143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 41094364 - 41094431
Alignment:
| Q |
96 |
gcatctttgattgacaaaataaaaagcatctgaaattgtagttaaagcatcatgtttgtaaacaagat |
163 |
Q |
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||||| |||||||| |||| ||||| ||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
41094364 |
gcatcgttgattgagaaaacaaaaaacatatgaacttgtagttaaagcatcatgtttgtaaacaagat |
41094431 |
T |
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