View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15036_low_6 (Length: 435)
Name: NF15036_low_6
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 44186167 - 44185752
Alignment:
| Q |
17 |
acttgcgaagtatgttgtgtagctgcaacttgtttagatgtgatgagatattcagtccacatcacaagattgtaaaaccattttgttttccaatatgcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44186167 |
acttgcgaagtatgttgtgtagctgcaacttgtttagatgtgatgagatattcagtccacatcacaagattgtaaaaccattttgttttccaatatgcaa |
44186068 |
T |
|
| Q |
117 |
atatatgtccaatctatatgcacatagattaatgagttattttccctaatactgttttaatattgtggcatagggatttagaccttaggtaaattgtgaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44186067 |
atatatgtccaatctatatgcacatagattaatgagtcattttccctaatactgttttaatattgtggcatagggatttagaccttaggtaacttgtgaa |
44185968 |
T |
|
| Q |
217 |
cattcattttgtgaacattgttcagttttgggctgctgaaaacaatatccttaactaaagcttctcttcagacaaaacttctgaacgatgctaaataata |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44185967 |
cattcattttgtgaacattgttcagttttgggctgctgaaagcaatatccttaactaaagcttctcttcagacaaaacttctgaacaatgctaaataata |
44185868 |
T |
|
| Q |
317 |
aaccaaaagagatagagataaggagatataaagagagagcacaagatac-atttttaggttagtaccatttaatttcaacaaggaaat-aaatatcacat |
414 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44185867 |
aaccaaaagagatagagataaagagatataaag--agagcacaaaatacaatttttaggttagtaccatttaatttcaacaaggaaataaaatatcacat |
44185770 |
T |
|
| Q |
415 |
ttacatgatgatgtccat |
432 |
Q |
| |
|
|||||||| | ||||||| |
|
|
| T |
44185769 |
ttacatgacggtgtccat |
44185752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 44192003 - 44191953
Alignment:
| Q |
172 |
tttaatattgtggcatagggatttagaccttaggtaaattgtgaacattca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
44192003 |
tttaatattgtggcatagggatttagactttaggtaacttgtgaacattca |
44191953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 30742318 - 30742357
Alignment:
| Q |
39 |
ctgcaacttgtttagatgtgatgagatattcagtccacat |
78 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
30742318 |
ctgcaacttgtttaaaagtgatgagatattcagtccacat |
30742357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 27186025 - 27186054
Alignment:
| Q |
25 |
agtatgttgtgtagctgcaacttgtttaga |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27186025 |
agtatgttgtgtagctgcaacttgtttaga |
27186054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University