View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15036_low_9 (Length: 399)
Name: NF15036_low_9
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15036_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Original strand, 14177844 - 14178218
Alignment:
| Q |
10 |
gcaaaggatgaaatgtttatcagctagatgttaaaagtgtttttcttcatgcagagctggttgaagatgtgtatgtggagctaactttaggttatcagaa |
109 |
Q |
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| T |
14177844 |
gcaaaggatgaaatgtttatcagctagatgttaaaagtgtttttcttcatgcagagctggttgaagatatgtatgtggagctacctttaggttatcagaa |
14177943 |
T |
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| Q |
110 |
tgatgatacaagcgtggtatgcaaactaaagaaagctatgtatggtatgagacgtacactaagacataatcttactttattcaagaaaaatttatgaaat |
209 |
Q |
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| T |
14177944 |
tgatgatacaagcgaggtatgcaaactaaagaaagctatgtatggtatgagacgtacactaagacataatcttactttattcaagaaaaatttatgaaat |
14178043 |
T |
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| Q |
210 |
gctctcatgaagacaccttatttgttaagaatgaatctggagggaaactgttaattgttagctggtatatggatgatctcatatatactgaaaatgatgt |
309 |
Q |
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| T |
14178044 |
gctctcatgaacacaccttatttgttaagaatgaatctggagggaaactgttaattgttagccggtatatggatgatctcatatatactgaaaatgatgt |
14178143 |
T |
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| Q |
310 |
tactatgtttgaaactttcaagcattctataaagggaaagttttccatgacagatttgggaaatatgagatattt |
384 |
Q |
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| T |
14178144 |
tactgtgtttgaaactttcaagcattctataaagggaaagtttgctatgacagatttgggaaatatgagatattt |
14178218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 20531262 - 20531305
Alignment:
| Q |
177 |
aatcttactttattcaagaaaaatttatgaaatgctctcatgaa |
220 |
Q |
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| T |
20531262 |
aatcttactttgctcaagaaaattttatgaaatgctctcatgaa |
20531305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 322
Target Start/End: Complemental strand, 3013167 - 3013022
Alignment:
| Q |
177 |
aatcttactttattcaagaaaaatttatgaaatgctctcatgaagacaccttatttgttaagaatgaatctggagggaaactgttaattgttagctggta |
276 |
Q |
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| T |
3013167 |
aatcttactttgctcaagaaaatttcatgaaatgctctcatgaacataccttgtttgtgaagaataactctgaagggaaaatgctaatagttagcctgat |
3013068 |
T |
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| Q |
277 |
tatggatgatctcatatatactgaaaatgatgttactatgtttgaa |
322 |
Q |
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| T |
3013067 |
tgtggatgatcttatatacacaggagatgatgttgctatgtttgaa |
3013022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 20544387 - 20544480
Alignment:
| Q |
10 |
gcaaaggatgaaatgtttatcagctagatgttaaaagtgtttttcttcatgcagagctggttgaagatgtgtatgtggagctaactttaggtta |
103 |
Q |
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||||||| || || || |||||||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||||| | |||||||||| |
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| T |
20544387 |
gcaaaggttggaacgtgtatcagcttgatgtcaagagtgcttttctgcatggagagttaattgaagatgtgtatgtggagcaacctttaggtta |
20544480 |
T |
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