View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15037_high_2 (Length: 436)

Name: NF15037_high_2
Description: NF15037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15037_high_2
NF15037_high_2
[»] chr6 (14 HSPs)
chr6 (1-414)||(1453549-1453962)
chr6 (1-414)||(1465241-1465654)
chr6 (74-241)||(1459317-1459478)
chr6 (74-189)||(370570-370685)
chr6 (125-189)||(1441935-1441999)
chr6 (291-414)||(1470922-1471045)
chr6 (290-414)||(176263-176387)
chr6 (290-337)||(370783-370830)
chr6 (291-414)||(1459540-1459663)
chr6 (129-239)||(176438-176548)
chr6 (290-347)||(1442106-1442163)
chr6 (39-108)||(176599-176668)
chr6 (290-347)||(7564749-7564806)
chr6 (134-182)||(1470750-1470798)
[»] chr7 (1 HSPs)
chr7 (204-346)||(3927056-3927198)
[»] chr4 (2 HSPs)
chr4 (291-347)||(55419778-55419834)
chr4 (72-180)||(55419942-55420050)
[»] chr3 (4 HSPs)
chr3 (292-337)||(2456255-2456300)
chr3 (292-335)||(1438003-1438046)
chr3 (291-337)||(3754606-3754652)
chr3 (292-337)||(771499-771544)
[»] scaffold0044 (1 HSPs)
scaffold0044 (292-343)||(89143-89194)
[»] chr5 (1 HSPs)
chr5 (291-337)||(11081819-11081865)
[»] scaffold0015 (1 HSPs)
scaffold0015 (293-333)||(32330-32370)


Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 1453549 - 1453962
Alignment:
Q  1 caacataaataaacagaataacagaagaaaacgtatttggagaatatttgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1453549 caacataaataaatagaataacagaagaaaacgtatttggagaatattcgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaac 1453648  T
Q  101 gtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagagtacgattcttgtaattgtaaacatatacctcataatttaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1453649 gtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacctcataatttaag 1453748  T
Q  201 tcgaagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatgaacggaatggcgaacaatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1453749 tcgaagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatgaacggaatggcgaacaatttat 1453848  T
Q  301 tccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagcaatccctagatactcccaagct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1453849 tccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatccctagatactcccaagct 1453948  T
Q  401 caagtcatgcagag 414  Q
    ||||||||||||||    
T  1453949 caagtcatgcagag 1453962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 1465241 - 1465654
Alignment:
Q  1 caacataaataaacagaataacagaagaaaacgtatttggagaatatttgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1465241 caacataaataaatagaataacagaagaaaacgtatttggagaatattcgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaac 1465340  T
Q  101 gtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagagtacgattcttgtaattgtaaacatatacctcataatttaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1465341 gtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacctcataatttaag 1465440  T
Q  201 tcgaagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatgaacggaatggcgaacaatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1465441 tcgaagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatgaacggaatggcgaacaatttat 1465540  T
Q  301 tccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagcaatccctagatactcccaagct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1465541 tccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatccctagatactcccaagct 1465640  T
Q  401 caagtcatgcagag 414  Q
    ||||||||||||||    
T  1465641 caagtcatgcagag 1465654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 241
Target Start/End: Original strand, 1459317 - 1459478
Alignment:
Q  74 aggttaaggtgatgtgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagagtacgattcttgtaa 173  Q
    |||| |||||||| ||||||||||  ||||||||||||| ||||||||  || ||      || ||||||| ||||||||||  | ||||||||||||||    
T  1459317 aggtcaaggtgatatgagactctctgcgtagacattagaagtaaacctagtaaaa------ccatgaatctcaggaatctttgaaatacgattcttgtaa 1459410  T
Q  174 ttgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcag 241  Q
    ||||||||||||| || || ||  || || | || ||||||| |||| ||||| ||||||||||||||    
T  1459411 ttgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcag 1459478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 370570 - 370685
Alignment:
Q  74 aggttaaggtgatgtgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagagtacgattcttgtaa 173  Q
    |||| |||||||| |||||||||||||||||||||||||| | ||     | ||| |||||| |||||| |||||| |||||  |||  |||||||||||    
T  370570 aggtcaaggtgatatgagactctcaacgtagacattagagatgaatgaagttgaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaa 370669  T
Q  174 ttgtaaacatatacct 189  Q
    ||||||||||||||||    
T  370670 ttgtaaacatatacct 370685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 1441935 - 1441999
Alignment:
Q  125 agaagggaggccttgaatcttaggaatctttagagtacgattcttgtaattgtaaacatatacct 189  Q
    |||||||||||||||||| ||| ||||||||| ||||| |||||||||||| ||| |||||||||    
T  1441935 agaagggaggccttgaatattatgaatctttacagtaccattcttgtaattataagcatatacct 1441999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 414
Target Start/End: Original strand, 1470922 - 1471045
Alignment:
Q  291 aacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagcaatccctagata 390  Q
    |||||||||  |||||| ||||||||||||||||  ||||||||||| ||||||||| |    || |  | |||||||||||||||| |||||||||| |    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaa 1471021  T
Q  391 ctcccaagctcaagtcatgcagag 414  Q
    | |||||||| |||| | ||||||    
T  1471022 cccccaagctaaagttacgcagag 1471045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 414
Target Start/End: Complemental strand, 176387 - 176263
Alignment:
Q  290 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagcaatccctagat 389  Q
    |||||||||| ||||||| ||||||||||||||||  ||||||  ||| ||||||||| |    |  | || |||||||| ||||| ||||||||||||     
T  176387 gaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaa 176288  T
Q  390 actcccaagctcaagtcatgcagag 414  Q
    || |||||||| |||| ||||||||    
T  176287 acccccaagctgaagttatgcagag 176263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 370783 - 370830
Alignment:
Q  290 gaacaatttattccaagagtctttatttccataatacttcataaccca 337  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  370783 gaacaatttagtccaagaatctttatttccataattcttcataaccca 370830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 414
Target Start/End: Original strand, 1459540 - 1459663
Alignment:
Q  291 aacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagcaatccctagata 390  Q
    ||||||||| ||||||| |||||||||||| |||  ||||||||||| ||||||||| |    || |  | |||||||| ||||||| |||||||| | |    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaa 1459639  T
Q  391 ctcccaagctcaagtcatgcagag 414  Q
    | |||||||| |||| ||||||||    
T  1459640 cccccaagctaaagttatgcagag 1459663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 176548 - 176438
Alignment:
Q  129 gggaggccttgaatcttaggaatctttagagtacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcgg 228  Q
    ||||||||||||||||| ||| ||||||  | || | |||||||||||||||||||||||| ||   | ||||  | ||||||||||   |||||||| |    
T  176548 gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatataccttattgatgaagtacacgaacacttggtggtcctcctcag 176449  T
Q  229 aaatataaagc 239  Q
    |||||||||||    
T  176448 aaatataaagc 176438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 1442106 - 1442163
Alignment:
Q  290 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaa 347  Q
    |||||||||| ||||||| |||||| ||||||||| ||||||||||||  ||||||||    
T  1442106 gaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaa 1442163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 176668 - 176599
Alignment:
Q  39 ggagaatatttgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaacgtagacat 108  Q
    ||||||| |||||||| || || || |||||||  |||| |||||||| ||||||||||||| |||||||    
T  176668 ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 7564749 - 7564806
Alignment:
Q  290 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaa 347  Q
    |||||||||| ||||||| || || |||||||||| |||||||||||| |||| ||||    
T  7564749 gaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaa 7564806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 1470750 - 1470798
Alignment:
Q  134 gccttgaatcttaggaatctttagagtacgattcttgtaattgtaaaca 182  Q
    ||||||||||  ||||||||||| ||||| || ||||||||||||||||    
T  1470750 gccttgaatcccaggaatctttacagtaccatccttgtaattgtaaaca 1470798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 346
Target Start/End: Complemental strand, 3927198 - 3927056
Alignment:
Q  204 aagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatgaacggaatggcgaacaatttattcc 303  Q
    |||||||||||| |||||||||| ||||||||| |||||  || |||||||| |||||  |||| || ||    | ||||||  |||||||||||| |||    
T  3927198 aagaacacttggtcatcctcctcagaaatataatgcagatcgacaaaaccaaaaccatgataaccaactttggcgtacggaactgcgaacaatttagtcc 3927099  T
Q  304 aagagtctttatttccataatacttcataacccagatatccaa 346  Q
    |||| | |||||||||||||| |||||||||||| ||| ||||    
T  3927098 aagaatttttatttccataatccttcataacccaaatacccaa 3927056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 55419834 - 55419778
Alignment:
Q  291 aacaatttattccaagagtctttatttccataatacttcataacccagatatccaaa 347  Q
    ||||||||| ||||||| |||||||||||||||  |||||||| |||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaa 55419778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 55420050 - 55419942
Alignment:
Q  72 taaggttaaggtgatgtgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagagtacgattcttgt 171  Q
    |||||| |||||||| | ||||| |||| ||||||| ||||| | |||   || ||||||||||||||||| | ||||||||||| | ||| |||||| |    
T  55420050 taaggtcaaggtgatatcagactttcaaagtagacaatagagttgaacgaatttgaagggaggccttgaatgtcaggaatctttacattaccattcttat 55419951  T
Q  172 aattgtaaa 180  Q
    |||||||||    
T  55419950 aattgtaaa 55419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 2456300 - 2456255
Alignment:
Q  292 acaatttattccaagagtctttatttccataatacttcataaccca 337  Q
    |||||||| |||||||||||||||||||||| | ||||||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataaccca 2456255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 1438046 - 1438003
Alignment:
Q  292 acaatttattccaagagtctttatttccataatacttcataacc 335  Q
    |||||||| |||||||||||||||||||||| | ||||||||||    
T  1438046 acaatttaatccaagagtctttatttccatattccttcataacc 1438003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 3754652 - 3754606
Alignment:
Q  291 aacaatttattccaagagtctttatttccataatacttcataaccca 337  Q
    ||||||||| ||||||| |||||||||||||| | ||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataaccca 3754606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 771499 - 771544
Alignment:
Q  292 acaatttattccaagagtctttatttccataatacttcataaccca 337  Q
    |||||||| ||||||||||| |||||||||| | ||||||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataaccca 771544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 89194 - 89143
Alignment:
Q  292 acaatttattccaagagtctttatttccataatacttcataacccagatatc 343  Q
    |||||||| ||||||| |||||||||||||| | |||||||||||| |||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatc 89143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 11081865 - 11081819
Alignment:
Q  291 aacaatttattccaagagtctttatttccataatacttcataaccca 337  Q
    ||||||||| ||||||| |||||||||||||| | ||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataaccca 11081819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 32330 - 32370
Alignment:
Q  293 caatttattccaagagtctttatttccataatacttcataa 333  Q
    ||||||| |||||||||||||||||||||| | ||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataa 32370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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