View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15037_low_1 (Length: 616)
Name: NF15037_low_1
Description: NF15037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15037_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 16164423 - 16164715
Alignment:
| Q |
14 |
caacttgtactaaagtgttgaccgaaatgagttttattgatattggctagaatccactgacttgtggtgtgtttggtgcttctgtgtctgaaccaccgaa |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16164423 |
caacttgtactaaagtgttgaccaaaatgagttttattgatattggctagaatccactgacttgtggtgtgtttggtgcttctgtgtctgtaccaccgaa |
16164522 |
T |
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| Q |
114 |
acagacatttcagccatgactattgactacaatgagaggaataattttgcctaatttttgcgtacccggtcgaagttccaaatacttttgtcatagtgga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
16164523 |
acagacatttcagccatgactattgactacaatgagaggaataattttgcctaatttttgcgtacccgatcgaagttccaaatacttttatcatagtgga |
16164622 |
T |
|
| Q |
214 |
cttgttctgatttttcagttacatttcaactaaatatattgcaatcatactttcacctaaaacatttgttctttgaacatcaagtatagacat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16164623 |
cttgttctgatttttcagttacatttcaactaaatatattgcaatcatactttcacctaaaacatttgttctttgaacatcaagtatacacat |
16164715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 476 - 607
Target Start/End: Original strand, 16164872 - 16165003
Alignment:
| Q |
476 |
aatgctagatcggattggtcatagccagtaagagaatatccattaagtggcagatagtagataactggacgtggttccaagagtaatcagaaaatttaat |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16164872 |
aatgctagatcggattggtcatagccagtaagagaatatccattaagtggcagatagtagataactggacgtggttccaagagtaatcagaaaatttaat |
16164971 |
T |
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| Q |
576 |
ataatttcttcagcatcatatacaagaataat |
607 |
Q |
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| T |
16164972 |
ataatttcttcagcatcatatacaagaataat |
16165003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 337 - 463
Target Start/End: Original strand, 16164707 - 16164833
Alignment:
| Q |
337 |
tatacacatttgaacatacagacagtatttgacatcaaattttgatatacaaaaaccatttctcttgataaaatatcacaggcgatagacgagtaagccc |
436 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16164707 |
tatacacatttggacatacagacagtatttgacatcaaattttgatatacaaaaaccatttctcttgataaaatatcacaggcgatagacgagtaagccc |
16164806 |
T |
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| Q |
437 |
ccatcatgcattccatttctaataatt |
463 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
16164807 |
ccaacatgcattccatttctaataatt |
16164833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 44013205 - 44012913
Alignment:
| Q |
14 |
caacttgtactaaagtgttgaccgaaatgagttttattgatattggctagaatccactgacttgtggtgtgtttggtgcttctgtgtctgaaccaccgaa |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44013205 |
caacttgtactaaagtgttgaccaaaatgagttttattgatattggctagaatccactgacttgtggtgtgtttggtgcttctgtgtctgtaccaccgaa |
44013106 |
T |
|
| Q |
114 |
acagacatttcagccatgactattgactacaatgagaggaataattttgcctaatttttgcgtacccggtcgaagttccaaatacttttgtcatagtgga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
44013105 |
acagacatttcagccatgactattgactacaatgagaggaataattttgcctaatttttgcgtacccgatcgaagttccaaatacttttatcatagtgga |
44013006 |
T |
|
| Q |
214 |
cttgttctgatttttcagttacatttcaactaaatatattgcaatcatactttcacctaaaacatttgttctttgaacatcaagtatagacat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44013005 |
cttgttctgatttttcagttacatttcaactaaatatattgcaatcatactttcacctaaaacatttgttctttgaacatcaagtatacacat |
44012913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 476 - 607
Target Start/End: Complemental strand, 44012756 - 44012625
Alignment:
| Q |
476 |
aatgctagatcggattggtcatagccagtaagagaatatccattaagtggcagatagtagataactggacgtggttccaagagtaatcagaaaatttaat |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44012756 |
aatgctagatcggattggtcatagccagtaagagaatatccattaagtggcagatagtagataactggacgtggttccaagagtaatcagaaaatttaat |
44012657 |
T |
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| Q |
576 |
ataatttcttcagcatcatatacaagaataat |
607 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44012656 |
ataatttcttcagcatcatatacaagaataat |
44012625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 337 - 463
Target Start/End: Complemental strand, 44012921 - 44012795
Alignment:
| Q |
337 |
tatacacatttgaacatacagacagtatttgacatcaaattttgatatacaaaaaccatttctcttgataaaatatcacaggcgatagacgagtaagccc |
436 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44012921 |
tatacacatttggacatacagacagtatttgacatcaaattttgatatacaaaaaccatttctcttgataaaatatcacaggcgatagacgagtaagccc |
44012822 |
T |
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| Q |
437 |
ccatcatgcattccatttctaataatt |
463 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
44012821 |
ccaacatgcattccatttctaataatt |
44012795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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