View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15037_low_3 (Length: 416)
Name: NF15037_low_3
Description: NF15037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15037_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 400
Target Start/End: Complemental strand, 25869093 - 25868701
Alignment:
| Q |
9 |
gattattcttatgttaatgaaatgcaaaaagcataactttatcaaaggcctaaaaaggggtgggttagttttatgtgactagtcaaagcnnnnnnngtca |
108 |
Q |
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| T |
25869093 |
gattattcttatgttaatgaaatgcaaaaagcataactttatcaaaggcctaaaaaggggtgggttagttttatgtgactagtcaaagcaaaaaaagtca |
25868994 |
T |
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| Q |
109 |
cactaatttcctagattgtcaacagcagtacaacacaaatatactttcatgtagccatctttttcttgttaccattatggttgaaaataacatttactga |
208 |
Q |
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| T |
25868993 |
cactaatttcctagattgtcaacagcagtacaacacaaatatactttcatgtagccatctttttcttgttaccattatggttgaaaataacatttactga |
25868894 |
T |
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| Q |
209 |
cgcatataaaaaa-ggtaacaatatgttactgaggttgaagttgatataactgagttttcatttgatatttccaaccacataactttactcacctttcct |
307 |
Q |
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| T |
25868893 |
cgcatataaaaaaaggtgacaatatgttactgaggttgaagttgatataactgaattttcatttgatatttccaaccacataactttactcacctttctt |
25868794 |
T |
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| Q |
308 |
tgtgagaagtctcattccatcagagaggagattctcctgtttgtaaacacagatttctgaaaaattaatgaattttggatgtatcttctatgt |
400 |
Q |
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| T |
25868793 |
tgtgagaagtctcattccatcagagaggagattctcctgtttgtaaacacagatttctgaaaaattaatgaattttggatgtatcttctatgt |
25868701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 347
Target Start/End: Complemental strand, 25866946 - 25866767
Alignment:
| Q |
168 |
tttttcttgttaccattatggttgaaaataacatttactgacgcatataaaaaaggtaacaatatgttactgaggttgaagttgatataactgagttttc |
267 |
Q |
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| T |
25866946 |
tttttcttgttaccatgatggttgtaaataacatttactgac--atatatttcttgttacagcgtgttattgagtttgaagttgctataactaagttctc |
25866849 |
T |
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| Q |
268 |
atttgatatttcc--aaccacataactttactcacctttccttgtgagaagtctcattccatcagagaggagattctcctgt |
347 |
Q |
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| T |
25866848 |
atttgatactcccccaacaaccaaactttactcacctttctgtgtgagaagtctcattccatcggagaggagattctcctgt |
25866767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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