View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_10 (Length: 420)
Name: NF15038_high_10
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 32 - 402
Target Start/End: Original strand, 43918569 - 43918939
Alignment:
| Q |
32 |
ttccttacaagacgcagtgttgtttttcttgtcatgtatctgcaatggaagtataactccattagagaaaagttcatcagctgaagatgtttcaaattca |
131 |
Q |
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| T |
43918569 |
ttccttataagacgcagtgttgtttttcttgtcatgtatctgcaatggaagtataactccattagagaaaagttcatcagctgaagatgttccaaattca |
43918668 |
T |
|
| Q |
132 |
atgtttttgccagtgatgaattcaaaatcagtatttgattcaagaagcagtgtgtctctacaagaaacaacatcatgtttcattggtgaaacatcattgg |
231 |
Q |
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| T |
43918669 |
atgtttttgctagtgatgaattcaaaatcagtatttgattcaagaagcagtgtgtctctacaagaaacaacatcatgtttcattggtgaaacatcattgg |
43918768 |
T |
|
| Q |
232 |
agaaagaaaaacgaggtgaagatgtttgagaacacataactgaaaacaggttcactttcaaaatcagaaaaggttgaaacaaaagaaggtgcaaagggat |
331 |
Q |
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| T |
43918769 |
agaaagaaaaacgaggtgaagatgtttgagaacacataactgaaaacaggttcactttcaaaatcagaaaaggttgaaacaaaagaaggtgcaaaggaat |
43918868 |
T |
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| Q |
332 |
ttttgtctattgttggaaaatagtagaaacgaaaaaaggaagatgaattaaatagagaaaagggtatctct |
402 |
Q |
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| T |
43918869 |
ttttgtatattgttggaaaatagtagaaacgaaaaaaggaagatgaattaaatagagaaaagggtatctct |
43918939 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 31328701 - 31328743
Alignment:
| Q |
90 |
ccattagagaaaagttcatcagctgaagatgtttcaaattcaa |
132 |
Q |
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| T |
31328701 |
ccattagagaaaagttcatcagctgaagatgattcaaactcaa |
31328743 |
T |
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