View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15038_high_15 (Length: 382)

Name: NF15038_high_15
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15038_high_15
NF15038_high_15
[»] chr2 (13 HSPs)
chr2 (20-132)||(15658779-15658891)
chr2 (23-132)||(35470285-35470393)
chr2 (54-126)||(8186308-8186380)
chr2 (314-366)||(15659073-15659125)
chr2 (43-132)||(29108749-29108838)
chr2 (75-132)||(45326701-45326758)
chr2 (54-127)||(25749683-25749756)
chr2 (48-132)||(6970470-6970554)
chr2 (43-131)||(28580399-28580487)
chr2 (41-128)||(32143613-32143700)
chr2 (159-193)||(15658918-15658952)
chr2 (49-107)||(33635700-33635758)
chr2 (43-127)||(8329653-8329737)
[»] chr4 (12 HSPs)
chr4 (34-132)||(1051781-1051879)
chr4 (43-132)||(3168397-3168486)
chr4 (52-132)||(1646593-1646673)
chr4 (46-129)||(33033220-33033303)
chr4 (34-128)||(49081279-49081373)
chr4 (29-132)||(7633155-7633258)
chr4 (43-122)||(47742774-47742853)
chr4 (71-132)||(40123775-40123837)
chr4 (50-123)||(36619910-36619983)
chr4 (71-128)||(37858419-37858476)
chr4 (61-118)||(50498895-50498952)
chr4 (56-128)||(42274313-42274385)
[»] chr5 (9 HSPs)
chr5 (43-132)||(9922923-9923012)
chr5 (42-132)||(35457339-35457424)
chr5 (36-132)||(33054089-33054185)
chr5 (70-126)||(38083950-38084006)
chr5 (56-127)||(8590130-8590201)
chr5 (61-127)||(932135-932201)
chr5 (43-89)||(26296450-26296496)
chr5 (43-107)||(26440086-26440150)
chr5 (43-107)||(32310983-32311046)
[»] chr1 (4 HSPs)
chr1 (43-132)||(6395467-6395556)
chr1 (43-132)||(19998561-19998650)
chr1 (43-123)||(963956-964036)
chr1 (159-193)||(48282859-48282893)
[»] chr8 (8 HSPs)
chr8 (49-132)||(7662280-7662363)
chr8 (25-128)||(8457527-8457630)
chr8 (23-128)||(34127641-34127747)
chr8 (20-132)||(4613372-4613483)
chr8 (29-107)||(44362278-44362356)
chr8 (26-123)||(42563177-42563274)
chr8 (75-128)||(41646466-41646518)
chr8 (43-87)||(30157849-30157893)
[»] chr3 (17 HSPs)
chr3 (43-132)||(14750337-14750426)
chr3 (43-132)||(55142316-55142405)
chr3 (49-127)||(34664271-34664349)
chr3 (75-122)||(4275515-4275562)
chr3 (81-132)||(30429402-30429453)
chr3 (48-127)||(40892801-40892880)
chr3 (56-129)||(37677368-37677441)
chr3 (41-107)||(9099173-9099239)
chr3 (159-193)||(36545128-36545162)
chr3 (159-193)||(36563152-36563186)
chr3 (74-128)||(39149166-39149220)
chr3 (75-128)||(32600684-32600737)
chr3 (43-107)||(27659755-27659819)
chr3 (159-187)||(27994452-27994480)
chr3 (49-127)||(38832964-38833044)
chr3 (96-132)||(52995169-52995205)
chr3 (30-122)||(53653103-53653194)
[»] chr6 (3 HSPs)
chr6 (49-132)||(8052217-8052299)
chr6 (56-128)||(29608465-29608537)
chr6 (33-89)||(2667077-2667133)
[»] scaffold0603 (1 HSPs)
scaffold0603 (56-107)||(7098-7149)
[»] chr7 (7 HSPs)
chr7 (49-132)||(25790097-25790180)
chr7 (43-102)||(30198321-30198380)
chr7 (43-132)||(8919386-8919476)
chr7 (159-193)||(37720503-37720537)
chr7 (32-109)||(6221091-6221168)
chr7 (43-127)||(30898074-30898158)
chr7 (43-107)||(40417684-40417748)
[»] scaffold0004 (1 HSPs)
scaffold0004 (83-132)||(351153-351202)
[»] scaffold0007 (1 HSPs)
scaffold0007 (43-127)||(185475-185559)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 15658779 - 15658891
Alignment:
Q  20 aatcggtgcctccggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttc 119  Q
    |||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15658779 aatcagtgcatccggggcactgattaaggaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttg 15658878  T
Q  120 aatgcaaattata 132  Q
    |||||||||||||    
T  15658879 aatgcaaattata 15658891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 35470393 - 35470285
Alignment:
Q  23 cggtgcctccggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaat 122  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  35470393 cggtgcctccggggcactggttaaggaattattaaaggaaatatttccttgaaaattgtgtattctatgttttaaaagttaaaaagttg-ttttttcaat 35470295  T
Q  123 gcaaattata 132  Q
    || |||||||    
T  35470294 gccaattata 35470285  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 8186308 - 8186380
Alignment:
Q  54 ttaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaa 126  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8186308 ttaaaggaaatattttcttggaaattgtgtattttatgttttaaaagttaaaaagttgctcttttcaatgcaa 8186380  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 15659073 - 15659125
Alignment:
Q  314 tttacatttcatttttagatttgttaaagaaatatttaatttcatattaaata 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15659073 tttacatttcatttttagatttgttaaagaaatatttaatttcatattaaata 15659125  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 29108838 - 29108749
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||| ||||||| |||||||||||||  ||| ||||||||||||  || |||||||||||||||| |||||||||||||| |||||||||    
T  29108838 ttaaggaattataaaaggaaatattttcttgaaaattgtgtatttcattttttaaaagttaaaaaattgctcttttcaatacaaattata 29108749  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 45326758 - 45326701
Alignment:
Q  75 aaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  45326758 aaattgtgtattctatcttttaaaagttaaaaagttgcacttttaaatgcaaattata 45326701  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 25749683 - 25749756
Alignment:
Q  54 ttaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaa 127  Q
    |||| ||||||||||  |||||||||||||||||||| |||| |||||||||||  || |||||||||||||||    
T  25749683 ttaagggaaatattttcttggaaattgtgtattctattttttgaaagttaaaaaagtgttcttttcaatgcaaa 25749756  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 6970554 - 6970470
Alignment:
Q  48 gaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    ||||||| |||||||||  ||| |||||||||||||||| ||||||||||||||| |||| ||||  ||| |||| |||||||||    
T  6970554 gaattataaaaggaaatgattccttggaaattgtgtattttatgttttaaaagttcaaaaattgcattttccaatacaaattata 6970470  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 28580487 - 28580399
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattat 131  Q
    |||| ||||||| |||| ||||||||   | ||||||||||||| ||| ||||||||||| |||| || ||||||||||| ||||||||    
T  28580487 ttaaagaattataaaagaaaatatttttatagaaattgtgtattttattttttaaaagttgaaaaattactcttttcaatacaaattat 28580399  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 32143613 - 32143700
Alignment:
Q  41 gattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    |||||| ||||||  |||| ||||||||  ||| |||||||||||||||| ||||||||||| |||  ||| | ||||||||| ||||    
T  32143613 gattaaagaattagaaaagaaaatattttcttgaaaattgtgtattctattttttaaaagttgaaatattgttattttcaatgtaaat 32143700  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 15658918 - 15658952
Alignment:
Q  159 aaccagtgccccgggggcatcggttaacaagaccc 193  Q
    ||||||||| |||||||||||||||||||||||||    
T  15658918 aaccagtgctccgggggcatcggttaacaagaccc 15658952  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 33635700 - 33635758
Alignment:
Q  49 aattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaa 107  Q
    |||||| |||| |||||||   |||||||||||||||||||  ||||||||||||||||    
T  33635700 aattataaaagaaaatattgtcttggaaattgtgtattctactttttaaaagttaaaaa 33635758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 8329653 - 8329737
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaa 127  Q
    |||| |||||||  |||||||||||   ||||||||| |||||||||  |||| |||||||||| | || |||||| ||||||||    
T  8329653 ttaaggaattatataaggaaatattattttggaaattatgtattctactttttgaaagttaaaatggtgttctttttaatgcaaa 8329737  T

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Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 1051781 - 1051879
Alignment:
Q  34 gggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||||| |||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1051781 gggcactgattaaggaattattaaaggaaatatttccttgaaaattgtgtattctatgttttaaaagttaaaaaattgctcttttcaatgcaaattata 1051879  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 3168397 - 3168486
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3168397 ttaaggaattattaaaggaaatatttctttaaaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 3168486  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 1646673 - 1646593
Alignment:
Q  52 tattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1646673 tattaaaggaaatatttctttgaaaattgtgtattttatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 1646593  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 33033303 - 33033220
Alignment:
Q  46 atgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaatt 129  Q
    ||||||||| |||| ||||||||  ||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  33033303 atgaattataaaagaaaatattttcttggaaattgtgtattctaagttttaaaagctaaaaaattgctcttttcaatgcaaatt 33033220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 49081373 - 49081279
Alignment:
Q  34 gggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    |||||| |||||| ||||||  |||||||||||||  ||| |||||||||||||||| |||||||||||||||  ||||||||||||||| ||||    
T  49081373 gggcactgattaaagaattagaaaaggaaatatttttttgaaaattgtgtattctattttttaaaagttaaaatattgctcttttcaatgtaaat 49081279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 7633258 - 7633155
Alignment:
Q  29 ctccggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    |||||||| || | |||| ||||||| |||||||||  ||  ||| |||||||||||||||| |||||||||||||||| ||||  |||||||||||||     
T  7633258 ctccgggggactggttaaggaattataaaaggaaatgattttttgaaaattgtgtattctatattttaaaagttaaaaaattgcatttttcaatgcaaaa 7633159  T
Q  129 tata 132  Q
    ||||    
T  7633158 tata 7633155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 47742853 - 47742774
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaat 122  Q
    |||| ||||||| ||||||||||||   |||||| ||||||||| ||  ||||||||||||||||  || ||||||||||    
T  47742853 ttaaggaattataaaaggaaatattatcttggaatttgtgtattatacattttaaaagttaaaaaagtgttcttttcaat 47742774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 40123775 - 40123837
Alignment:
Q  71 ttggaaattgtgtattctatgttttaaaagttaaaaag-ttgctcttttcaatgcaaattata 132  Q
    |||| ||||||||||| ||| ||| ||||||||||||  ||| ||||||||||||||||||||    
T  40123775 ttggtaattgtgtattttatatttgaaaagttaaaaaaattgttcttttcaatgcaaattata 40123837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 36619983 - 36619910
Alignment:
Q  50 attattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatg 123  Q
    ||||| ||||||||||||  ||||||||||||||||| ||  ||||||||||| |||   || |||||||||||    
T  36619983 attataaaaggaaatattgtattggaaattgtgtattttactttttaaaagtttaaatagtgttcttttcaatg 36619910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 37858476 - 37858419
Alignment:
Q  71 ttggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    |||||||||||||||||||| || |||||||| |||  ||  ||||||||||||||||    
T  37858476 ttggaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaat 37858419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 50498895 - 50498952
Alignment:
Q  61 aaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctctttt 118  Q
    ||||||||  |||||||||||||||| ||| |||| ||||||||||  ||||||||||    
T  50498895 aaatatttttttggaaattgtgtattttatttttttaaagttaaaatattgctctttt 50498952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 42274385 - 42274313
Alignment:
Q  56 aaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    |||||||||||||  ||| ||||||||| |||||| ||||||||||| |||  || ||||||| |||| ||||    
T  42274385 aaaggaaatatttttttgaaaattgtgtgttctattttttaaaagttgaaatatttctctttttaatgtaaat 42274313  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 9923012 - 9922923
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||| |||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  9923012 ttaaggaattattaaagaaaatatttctttgaaaattgtgtattatatgttttaaaagttaaaaagttgctcttttcaattcaaattata 9922923  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 35457339 - 35457424
Alignment:
Q  42 attaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    ||||| |||||||||||||||||||||  ||| ||||     ||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  35457339 attaaggaattattaaaggaaatattttcttgaaaat-----attctatgtttgaaaagttaaaaagttgttcttttcaatgcaaattata 35457424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 33054185 - 33054089
Alignment:
Q  36 gcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||| ||||||  |||||||||| |||||||||  ||  |||||||||||||||| ||| |||| ||||||||||  ||||||||||  ||||||||    
T  33054185 gcactgattaagaaattattaaaagaaatattttctttaaaattgtgtattctatatttgaaaaattaaaaagttattcttttcaatttaaattata 33054089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 38083950 - 38084006
Alignment:
Q  70 attggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaa 126  Q
    |||| |||| ||||||| ||| |||||||||||||||  ||||||||||||||||||    
T  38083950 attgaaaatggtgtattgtatattttaaaagttaaaacattgctcttttcaatgcaa 38084006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 8590130 - 8590201
Alignment:
Q  56 aaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaa 127  Q
    |||| ||||||||  |||||||||||||||| ||  ||||||||||||||||  || | |||||||||||||    
T  8590130 aaagaaaatatttttttggaaattgtgtattttaccttttaaaagttaaaaaagtgttattttcaatgcaaa 8590201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 932135 - 932201
Alignment:
Q  61 aaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaa 127  Q
    |||||||  ||||||||||||||||| ||  |||| |||||||||||  || |||||||||||||||    
T  932135 aaatattgtattggaaattgtgtattttacttttttaaagttaaaaaaatgttcttttcaatgcaaa 932201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 26296496 - 26296450
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattcta 89  Q
    |||| ||||||| ||||||||||||  ||||||||||||||||||||    
T  26296496 ttaaagaattataaaaggaaatattgtattggaaattgtgtattcta 26296450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 26440086 - 26440150
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaa 107  Q
    |||| ||||||| ||| ||||||| |  || ||||||||||||||||  ||||||||||||||||    
T  26440086 ttaaggaattataaaatgaaatatctttttagaaattgtgtattctactttttaaaagttaaaaa 26440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 32311046 - 32310983
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaa 107  Q
    |||||||||||| |||||||||| |  ||||   |||||||||||||| ||||||||||||||||    
T  32311046 ttaatgaattataaaaggaaatagtgtattgatcattgtgtattctat-ttttaaaagttaaaaa 32310983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 6395467 - 6395556
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||| |||||||||||| ||||||||  ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  6395467 ttaaggaattattaaagaaaatatttttttgaaaattgtgtattttatgttttaaaagttaaaaagttgttcttttcaatgcaaattata 6395556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 19998650 - 19998561
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||| |||| || |||| ||||| ||| ||| |||||||||||||||| |||||||||||||||| |||  |||||||||||| ||||||    
T  19998650 ttaaggaatcataaaagaaaataattctttgaaaattgtgtattctatattttaaaagttaaaaaattgtacttttcaatgcatattata 19998561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 963956 - 964036
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatg 123  Q
    |||| ||||||| | ||||||||||   |||||||||||||||||||  |||| |||||||||||  || |||||||||||    
T  963956 ttaaggaattataataggaaatattgtcttggaaattgtgtattctactttttcaaagttaaaaaagtgttcttttcaatg 964036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 48282893 - 48282859
Alignment:
Q  159 aaccagtgccccgggggcatcggttaacaagaccc 193  Q
    ||||||||||||||||||| |||||||||||||||    
T  48282893 aaccagtgccccgggggcaccggttaacaagaccc 48282859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 7662363 - 7662280
Alignment:
Q  49 aattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||| ||| ||| | ||||||||||||||||||    
T  7662363 aattattaaaggaaatatttttttggaaattgtgtattctatattttaaaagttagaaaattgtttttttcaatgcaaattata 7662280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 8457630 - 8457527
Alignment:
Q  25 gtgcctccggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgc 124  Q
    ||||| ||||| ||| |||||| ||||||  |||||||||||||  |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||     
T  8457630 gtgcccccgggccactgattaaggaattagaaaaggaaatattttcttggaaattgtgtattctattttttaaaagttgaaatgttgctcttttcaatgt 8457531  T
Q  125 aaat 128  Q
    ||||    
T  8457530 aaat 8457527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 34127641 - 34127747
Alignment:
Q  23 cggtgcctccggggcacggattaatgaattattaaaggaaatat-ttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaa 121  Q
    ||||||| ||||||||| | |||| ||||||  ||||||||||| ||  |||||||||||||||||||| |||||||||||||||  |||||||||||||    
T  34127641 cggtgcccccggggcactggttaaggaattagaaaaggaaatatatttcttggaaattgtgtattctattttttaaaagttaaaatattgctcttttcaa 34127740  T
Q  122 tgcaaat 128  Q
    || ||||    
T  34127741 tgtaaat 34127747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 4613372 - 4613483
Alignment:
Q  20 aatcggtgcctccggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttc 119  Q
    ||||| ||| |||||  ||| |||||| ||||||| |||| ||||||||  ||| ||||| ||||||||  ||||||||||||||||| ||| ||||||     
T  4613372 aatcgatgcttccggaccaccgattaaggaattataaaagaaaatatttttttg-aaattatgtattctgagttttaaaagttaaaaaattgatcttttt 4613470  T
Q  120 aatgcaaattata 132  Q
    |||||||||||||    
T  4613471 aatgcaaattata 4613483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 44362278 - 44362356
Alignment:
Q  29 ctccggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaa 107  Q
    ||||||||||  | |||| ||||||| ||| ||||||||  |||| |||||||||||||||| |||| |||||||||||    
T  44362278 ctccggggcagtggttaaggaattataaaaagaaatattgtattgaaaattgtgtattctattttttgaaagttaaaaa 44362356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 42563177 - 42563274
Alignment:
Q  26 tgcctccggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatg 123  Q
    ||||||||| ||||   |||| ||||||| ||||||||||||  |||| ||||| || ||||||| |||| |||||||| || ||| |||||||||||    
T  42563177 tgcctccggagcactagttaaggaattataaaaggaaatattgtattgaaaattctgcattctattttttgaaagttaataaattgttcttttcaatg 42563274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 41646466 - 41646518
Alignment:
Q  75 aaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    |||||||||||||||| |||||||||||||||  || || ||||||||||||||    
T  41646466 aaattgtgtattctattttttaaaagttaaaatattact-ttttcaatgcaaat 41646518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 30157893 - 30157849
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattc 87  Q
    ||||||||||||||||||||||||||  ||| ||||||| |||||    
T  30157893 ttaatgaattattaaaggaaatattttcttgaaaattgtatattc 30157849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 14750337 - 14750426
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||| ||||||| | |||||||  ||| |||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||    
T  14750337 ttaaggaattataagaggaaatgattccttggaaattgtgtattctatattttaaaagttaaaaatttgcacttttcaatacaaattata 14750426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 55142405 - 55142316
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||| ||||||| |||| ||||||||  ||||||||||||||||||||||||| ||| ||||||||| | |||||||||||||| |||||    
T  55142405 ttaaagaattataaaagaaaatatttttttggaaattgtgtattctatgttttgaaatttaaaaagtcgatcttttcaatgcaagttata 55142316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 34664271 - 34664349
Alignment:
Q  49 aattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaa 127  Q
    |||||| | ||||||||||| |||||||||| |||||||||| ||||||||||| |||| |  ||||||||||||||||    
T  34664271 aattataataggaaatattttattggaaattatgtattctattttttaaaagttgaaaaatgactcttttcaatgcaaa 34664349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 4275515 - 4275562
Alignment:
Q  75 aaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaat 122  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  4275515 aaattgtgtattctatgttttaaaagttaaaaaattgcacttttcaat 4275562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 30429453 - 30429402
Alignment:
Q  81 tgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  30429453 tgtattctatgttttaaaagttaaaatattgcttttttcaatgcaaattata 30429402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 40892801 - 40892880
Alignment:
Q  48 gaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaa 127  Q
    ||||||| |||||||||||||  |||||||||||||||||||  |||| |||||||| ||  || |||||||||||||||    
T  40892801 gaattataaaaggaaatattttcttggaaattgtgtattctactttttgaaagttaataaagtgttcttttcaatgcaaa 40892880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 37677368 - 37677441
Alignment:
Q  56 aaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaatt 129  Q
    |||||||||||||  ||| |||||||||||||||| ||||||||||| |||  |||||||| |||||| |||||    
T  37677368 aaaggaaatattttcttgaaaattgtgtattctattttttaaaagttgaaatattgctcttgtcaatgtaaatt 37677441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 9099239 - 9099173
Alignment:
Q  41 gattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaa 107  Q
    |||||| ||||||| ||||||||||||  ||||||||| |||||||| |  |||| |||||||||||    
T  9099239 gattaaggaattataaaaggaaatattgtattggaaatcgtgtattcaactttttgaaagttaaaaa 9099173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 36545162 - 36545128
Alignment:
Q  159 aaccagtgccccgggggcatcggttaacaagaccc 193  Q
    ||||||||||||||||||| |||||||||||||||    
T  36545162 aaccagtgccccgggggcaccggttaacaagaccc 36545128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 36563152 - 36563186
Alignment:
Q  159 aaccagtgccccgggggcatcggttaacaagaccc 193  Q
    ||||||||||||||||||| |||||||||||||||    
T  36563152 aaccagtgccccgggggcaccggttaacaagaccc 36563186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 39149166 - 39149220
Alignment:
Q  74 gaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    ||||||||||||||||| ||||||||||| |||  ||| | ||||||||||||||    
T  39149166 gaaattgtgtattctattttttaaaagttgaaatattgttattttcaatgcaaat 39149220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 32600684 - 32600737
Alignment:
Q  75 aaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    |||||||||||||||| ||||||||||| ||   |||||||||||||| |||||    
T  32600684 aaattgtgtattctatattttaaaagttgaattattgctcttttcaatacaaat 32600737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 27659819 - 27659755
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaa 107  Q
    |||||||||||| ||| |||||| ||  ||| |||||||||||||||| |||| |||||| ||||    
T  27659819 ttaatgaattataaaatgaaataattttttgaaaattgtgtattctattttttgaaagttgaaaa 27659755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 27994452 - 27994480
Alignment:
Q  159 aaccagtgccccgggggcatcggttaaca 187  Q
    |||||||||||||||||||||||||||||    
T  27994452 aaccagtgccccgggggcatcggttaaca 27994480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 38832964 - 38833044
Alignment:
Q  49 aattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagtt-aaaaagt-tgctcttttcaatgcaaa 127  Q
    |||||| ||||||||||||  |||| ||||| |||||||||  |||| |||||| ||||||| || |||||||||||||||    
T  38832964 aattataaaaggaaatattgtattgaaaattatgtattctactttttgaaagttaaaaaagtatgttcttttcaatgcaaa 38833044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 52995169 - 52995205
Alignment:
Q  96 aaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||||||||||  ||||||||||||||||||||||||    
T  52995169 aaaagttaaaacattgctcttttcaatgcaaattata 52995205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 53653103 - 53653194
Alignment:
Q  30 tccggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaat 122  Q
    |||||||||| | |||| ||||||| |||| |||| ||  |||| |||||||||||||||  |||| |||||||||||  || ||||||||||    
T  53653103 tccggggcactggttaaagaattataaaagaaaattttatattgaaaattgtgtattcta-ctttttaaagttaaaaaagtgttcttttcaat 53653194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 8052217 - 8052299
Alignment:
Q  49 aattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||||| |||||||||  ||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||    
T  8052217 aattataaaaggaaattattccttggaaattgtgtattctatgttttaaaagtt-aaaagttgcacttttcaataaaaattata 8052299  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 29608465 - 29608537
Alignment:
Q  56 aaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaat 128  Q
    ||||||||||| |  ||||||||| |||||||||| |||||||||||||||  ||| ||||||||||| ||||    
T  29608465 aaaggaaatatatttttggaaattatgtattctattttttaaaagttaaaatattgttcttttcaatgtaaat 29608537  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 2667077 - 2667133
Alignment:
Q  33 ggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattcta 89  Q
    ||||||||| |||| ||||||| |||| |||||||  ||||||||||||||||||||    
T  2667077 ggggcacgggttaaggaattataaaagaaaatattgtattggaaattgtgtattcta 2667133  T

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Target: scaffold0603 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 7098 - 7149
Alignment:
Q  56 aaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaa 107  Q
    |||||||||| ||  ||| |||||||||||||||| ||||||||||||||||    
T  7098 aaaggaaataatttcttgaaaattgtgtattctatattttaaaagttaaaaa 7149  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 25790180 - 25790097
Alignment:
Q  49 aattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||||| |||| ||||||||  || |||||||| || ||||  |||| |||||| |||| |||||||||||||| |||||||||    
T  25790180 aattataaaagaaaatattttcttagaaattgtatactctaattttttaaagttgaaaaattgctcttttcaatacaaattata 25790097  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 30198321 - 30198380
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagtt 102  Q
    |||| ||||||  |||||||||||||  || ||||||||||||||||| |||||||||||    
T  30198321 ttaaggaattagaaaaggaaatattttcttagaaattgtgtattctattttttaaaagtt 30198380  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 8919386 - 8919476
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagtt-aaaaagttgctcttttcaatgcaaattata 132  Q
    |||| ||||||| |||||||||  ||  ||| ||||||| |||||||| ||||||||||| ||||| ||||  ||||||||||||| ||||    
T  8919386 ttaaggaattataaaaggaaatgattttttgaaaattgtatattctatattttaaaagttaaaaaaattgcatttttcaatgcaaaatata 8919476  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 37720537 - 37720503
Alignment:
Q  159 aaccagtgccccgggggcatcggttaacaagaccc 193  Q
    ||||||||||| |||||||||||||||||||||||    
T  37720537 aaccagtgccctgggggcatcggttaacaagaccc 37720503  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 6221168 - 6221091
Alignment:
Q  32 cggggcacggattaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagt 109  Q
    |||||||| | |||| ||||||| |||||| |||||   ||||||||||| |||||||  |||| |||||||||||||    
T  6221168 cggggcactggttaaggaattataaaaggagatattgtcttggaaattgtatattctactttttgaaagttaaaaagt 6221091  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 30898158 - 30898074
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaa 127  Q
    |||| ||||||| |||||||||||||  ||| ||| |||  ||||||  |||| |||||||||||| || ||||| |||||||||    
T  30898158 ttaaggaattataaaaggaaatattttcttgaaaactgtacattctactttttgaaagttaaaaagatgttctttccaatgcaaa 30898074  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 40417748 - 40417684
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaa 107  Q
    |||| ||||||| |||| |||||||   ||||||||||||| |||||| |||| |||||||||||    
T  40417748 ttaaggaattataaaagaaaatattgttttggaaattgtgttttctattttttgaaagttaaaaa 40417684  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 351153 - 351202
Alignment:
Q  83 tattctatgttttaaaagttaaaaagttgctcttttcaatgcaaattata 132  Q
    |||||||| |||||||||||||||| |||| |||||||||| | ||||||    
T  351153 tattctatattttaaaagttaaaaaattgcacttttcaatgtatattata 351202  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 185559 - 185475
Alignment:
Q  43 ttaatgaattattaaaggaaatatttcattggaaattgtgtattctatgttttaaaagttaaaaagttgctcttttcaatgcaaa 127  Q
    |||| ||||||| |||| |||||||  |||| |||||||||||||||  |||| ||| ||| |||  || |||||||||||||||    
T  185559 ttaaggaattataaaagaaaatattgtattgaaaattgtgtattctactttttgaaaattagaaaagtgatcttttcaatgcaaa 185475  T

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