View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15038_high_18 (Length: 372)
Name: NF15038_high_18
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 2480281 - 2480137
Alignment:
| Q |
1 |
cgtggtgaatgtgaaccatgaagaaagaagctaatatctcaaaaatcagccaatgttttgtgtttttagtgtttatcttttagtatttcaaaagttaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2480281 |
cgtggtgaatgtgaaccatgaagaaagaagctaatatctcaaaaatcagccaatgttttgtgtttttagtgtttatcttctagtatttcaaaagttaaaa |
2480182 |
T |
|
| Q |
101 |
atctcacatcgattgaactagtaactatttatataaagtaatata |
145 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480181 |
atcccacatcgattgaactagtaactatttatataaagtaatata |
2480137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 218 - 359
Target Start/End: Complemental strand, 2479250 - 2479095
Alignment:
| Q |
218 |
attacaacaagatttgattcatctttggaaacaacgaaaacaattccattttgatattttaatt--------------catctttcgaattatataattg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2479250 |
attacaacaagatttgattcatctttggaaacaacgaaaacgattccattttgatattttcattttgacattttgattcatctttcgaattatataatta |
2479151 |
T |
|
| Q |
304 |
caccctgctcaacctttttctgctcaatctttgaaaattaatggttcatacagtct |
359 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2479150 |
caccttgctcaacctttttctgctcaatctttgaaaattaatggttcatacagtct |
2479095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 2480100 - 2480060
Alignment:
| Q |
144 |
taaattgttaaagtatctaacttcgacacgtttaacctata |
184 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
2480100 |
taaattgttaaagtatctgacttcgacacatttaacctata |
2480060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 27109542 - 27109686
Alignment:
| Q |
1 |
cgtggtgaatgtgaaccatgaagaaagaagctaatatctcaaaaatcagccaatgttttgtgtttttagtgtttatcttttagtatttcaaaagttaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27109542 |
cgtggtgaatgtgaaccatgaagaaagaagctaatatctcaaaaatcagccaatgttttgtgtttttagtgtttatcttctagtatttcaaaagttaaaa |
27109641 |
T |
|
| Q |
101 |
atctcacatcgattgaactagtaactatttatataaagtaatata |
145 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27109642 |
atcccacatcgattgaactagtaactatttatataaagtaatata |
27109686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 218 - 359
Target Start/End: Original strand, 27110573 - 27110728
Alignment:
| Q |
218 |
attacaacaagatttgattcatctttggaaacaacgaaaacaattccattttgatattttaatt--------------catctttcgaattatataattg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
27110573 |
attacaacaagatttgattcatctttggaaacaacgaaaacgattccattttgatattttcattttgacattttgattcatctttcgaattatataatta |
27110672 |
T |
|
| Q |
304 |
caccctgctcaacctttttctgctcaatctttgaaaattaatggttcatacagtct |
359 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27110673 |
caccttgctcaacctttttctgctcaatctttgaaaattaatggttcatacagtct |
27110728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 27109723 - 27109763
Alignment:
| Q |
144 |
taaattgttaaagtatctaacttcgacacgtttaacctata |
184 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
27109723 |
taaattgttaaagtatctgacttcgacacatttaacctata |
27109763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University