View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_2 (Length: 508)
Name: NF15038_high_2
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 100 - 491
Target Start/End: Original strand, 34319677 - 34320068
Alignment:
| Q |
100 |
cgcaggcaagtgctgaatgtcaccaagcagaaaccaacgtgattggttattttcgagattaaatgaaaacgttttccttttcctctctaaaataataata |
199 |
Q |
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| T |
34319677 |
cgcagacaagtgctgaatgtcaccaagcagaaatcaacgtgattggttattttcgagattaaatgaaaacgttttccttttcctctctaaaataataata |
34319776 |
T |
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| Q |
200 |
ctaa------cacgttggtgaaaggtgagtgatgtaatatacgcgtgttcatactttaaactggtcttgatcttgtattaatgttcataattcatacact |
293 |
Q |
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| T |
34319777 |
ctaactctaacacgttggtgaaaggtgggtgatgtaatatacgcgtgttcatactttaaactggtcttgatcttgtattaatgttcataattcatacact |
34319876 |
T |
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| Q |
294 |
atataaacacttttatgctatgtgtatggcaatccattcaatcaatatataccagtgagcataaattatattgtactagtgagaatattaatcagttgta |
393 |
Q |
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| T |
34319877 |
atataaacac-tttatgctatgtgtatggcaatccattcaatca--atataccagtgagcataa-----attgtactagtgagaatattaatcagttgtt |
34319968 |
T |
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| Q |
394 |
gagccaatcaaatacc--atggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctt |
491 |
Q |
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| T |
34319969 |
gagccaatcaaataccatatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttatccactttctt |
34320068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 34328891 - 34328976
Alignment:
| Q |
406 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctt |
491 |
Q |
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| T |
34328891 |
taccatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactccttctcacctcaaaatatacccactttctt |
34328976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 406 - 491
Target Start/End: Complemental strand, 36622830 - 36622745
Alignment:
| Q |
406 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctt |
491 |
Q |
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| T |
36622830 |
taccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccttctcaccttaaactttatccactttctt |
36622745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 384 - 491
Target Start/End: Complemental strand, 36634222 - 36634118
Alignment:
| Q |
384 |
atcagttgtagagccaatcaaataccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttcc |
483 |
Q |
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|||||||| |||| |||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| | ||||||| |
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| T |
36634222 |
atcagttggagaggcaattgattaccatggagattgaattactttcaagagaaaccatcaaaccttcatcaccaactc---ctcatctcaaactttttcc |
36634126 |
T |
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| Q |
484 |
actttctt |
491 |
Q |
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|||||||| |
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| T |
36634125 |
actttctt |
36634118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 36628067 - 36628000
Alignment:
| Q |
406 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctca |
473 |
Q |
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| T |
36628067 |
taccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctca |
36628000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 36634372 - 36634312
Alignment:
| Q |
244 |
atactttaaactggtcttgatcttgtattaatgttcataattcatacactatataaacactt |
305 |
Q |
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| T |
36634372 |
atactttagactggtcttgatcttgtaat-agctttataattcatgcactatataaacactt |
36634312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 491
Target Start/End: Complemental strand, 45307192 - 45307111
Alignment:
| Q |
410 |
atggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctt |
491 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||||| |
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| T |
45307192 |
atggaaatggaattagtttccagagaaaccatcaaaccttcatcgccaactcctcatcaccttagaatatatccactttctt |
45307111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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