View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_24 (Length: 322)
Name: NF15038_high_24
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 29068262 - 29068530
Alignment:
| Q |
15 |
caaaggggaggggaattccaaaccgtccataggatcgtcatcttcatgttgaatgggaccacactcagctaaaatatcggtatcgaaatgccatgtgaac |
114 |
Q |
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| T |
29068262 |
caaaggggaggggaattccaaaccgtccataggatcgtcatcttcatgttgaatgggaccacactcagctaaaatatcggtatcgaaatgccatgtgaac |
29068361 |
T |
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| Q |
115 |
cacaaaccatgaaatgtaacgttata---nnnnnnncaaaaac--aaatacannnnnnnagtaataataattaatgaagaattgtaccaattaatgaagg |
209 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
29068362 |
cacaaaccatgaaatgtaacgttatattttttttttcaaaaacataaatacatttttttagtaataat------tgaagaattgtaccaattaatgaagg |
29068455 |
T |
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| Q |
210 |
tggtactactaataaattgcagtnnnnnnncaacatgtgacagaact----gtcagtactcaacaactcagtgat |
280 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29068456 |
tggtactactaataaattgcagtaaaaaaacaacatgtgacagaactgtcagtcagtactcaacaactcagtgat |
29068530 |
T |
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