View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15038_high_26 (Length: 295)

Name: NF15038_high_26
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15038_high_26
NF15038_high_26
[»] chr8 (1 HSPs)
chr8 (1-289)||(45548429-45548718)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 45548429 - 45548718
Alignment:
Q  1 ttataagaaatgtactcaatttaaaagattttactccatgttaaagttttatagtaacttaataaaggaggaaactcttctttctaatgaaaacttgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45548429 ttataagaaatgtactcaatttaaaagattttactccatgttaaagttttatagtaacttaataaaggaggaaactcttctttctaatgaaaacttgctg 45548528  T
Q  101 ttcagaactcctcaccagttacaaacttacaaccaacaaaattgtattgcaaat-acataaaaaacttccatagtatggttgtcatattcaatcagcgct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  45548529 ttcagaactcctcaccagttacaaacttacaaccaacaaaattgtattgcaaataacataaaaaactttcatagtatggttgtcatattcaatcagcgct 45548628  T
Q  200 ccttgaatgtgcaatattctttggcgatctcatccagaagtatactaaggatatgcttttctgtatcccttataacatcatattcttcga 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45548629 ccttgaatgtgcaatattctttggcgatctcatccagaagtatactaaggatatgcttttctgtatcccttataacatcatatttttcga 45548718  T

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