View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_30 (Length: 285)
Name: NF15038_high_30
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 34572991 - 34573270
Alignment:
| Q |
1 |
caagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtcttatggagaacaactttgctatgtcggaacggtactatgataaaaatc |
100 |
Q |
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| T |
34572991 |
caagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtctgatggagaacaactttgctatgtcggaacggtactatgataaaaatc |
34573090 |
T |
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| Q |
101 |
tagtggctatggatccattttagatgaatattttgttgagccaacagaagaaaagaaatnnnnnnntcaaaagttgaacgtcaaagacccttaagagatt |
200 |
Q |
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| T |
34573091 |
tagtggctatggatccattttagatgaatattttgttgagccaacagaagaaaagaaataaaaaaatcaaaagttgaacgtcaaagacccttaagagatt |
34573190 |
T |
|
| Q |
201 |
tagatatcatatcattaatcaaaacc-----ttattaggtaaataagccacatcccttatatattcaacatttagttcat |
275 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34573191 |
tagatatcatatcattaatcaaaaccttattttattaggtaaataagccacatcccttatatattcaacatttagttcat |
34573270 |
T |
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