View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_34 (Length: 267)
Name: NF15038_high_34
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 32374335 - 32374456
Alignment:
| Q |
113 |
cttttaacagagagaaccggttagcaggtgaagaactttaaaatatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaagtgttagagcatc |
212 |
Q |
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| T |
32374335 |
cttttaacggagagaaccggttaacaggtgaagaactttaaaaaatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaactgttagagcatc |
32374434 |
T |
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| Q |
213 |
tgtacctagcagttctcatatt |
234 |
Q |
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| T |
32374435 |
tgtccctagcagttctcttatt |
32374456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 32374242 - 32374304
Alignment:
| Q |
17 |
cagatgctaatgactgaagaggtggagacgtaaaaaagaggggcctttatattttttaattat |
79 |
Q |
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| T |
32374242 |
cagatactaatgactgaagagatggaggcgtaaaaaaggggggcctttatattttttaattat |
32374304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 7499849 - 7499962
Alignment:
| Q |
116 |
ttaacagagagaaccggttagcaggtgaagaactttaaaatatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaagtgttagagcatctgt |
215 |
Q |
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| T |
7499849 |
ttaacggagagaatcgagtaacagatgaagaactttaaaaaatgggtgatgtggctcagcaattgagcgagtgtttgtaagcgaccgtttgagaatctgt |
7499948 |
T |
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| Q |
216 |
acctagcagttctc |
229 |
Q |
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| T |
7499949 |
tcctagcagttctc |
7499962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 7499765 - 7499820
Alignment:
| Q |
20 |
atgctaatgactgaagaggtggagacgtaaaaaagaggggcctttatattttttaat |
76 |
Q |
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| T |
7499765 |
atgctaatgaccgaagaggtggagacgttaaaaa-tgaggcctttatattttttaat |
7499820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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