View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_36 (Length: 261)
Name: NF15038_high_36
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 10408419 - 10408574
Alignment:
| Q |
24 |
agacttacacgaaaatttaccaactcaagagaccgacacgtctacatattggatgcaacatacataagccaaaatcttaaaatttgagagagaacatata |
123 |
Q |
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| T |
10408419 |
agacttacacgaaaatttaccaactcaagagaccgacacgtctacatattggatgcaacatacataagccaaaatcttaaaatttgagagagaacatata |
10408518 |
T |
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| Q |
124 |
tgattttttatcaaacacatctgccgtatagaaggaagagtaatggctttaattag |
179 |
Q |
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| T |
10408519 |
tgattttttatcaaacacatctgccgtatagaaggaagagtaatggctttaattag |
10408574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 10408601 - 10408652
Alignment:
| Q |
197 |
aattagatgacccgtacacatttaaagtcaggttggaaaactatgatgatgt |
248 |
Q |
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| T |
10408601 |
aattagatgacccgtacacatttaaagtcaggttggaaaactatgatgatgt |
10408652 |
T |
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