View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_40 (Length: 250)
Name: NF15038_high_40
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 33624844 - 33624629
Alignment:
| Q |
18 |
atcatgaagattacattcttattgcattgtggtgttaa----atatacactcacacatgctaattaacttgctaaaaactctcaattattaacaaacttc |
113 |
Q |
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| T |
33624844 |
atcatgaaaatttcattctaattgcattgtggtgttaagcttatatacactcacacattctaattaacttgctaaaaactctcaattattaacacacttc |
33624745 |
T |
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| Q |
114 |
ttaactaacttttaacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaaaactgaatt-ttaaaaaatctagtacaaatat |
212 |
Q |
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| T |
33624744 |
ttaactaacctttaacacaagtgaactcctaacaactatgaattatagatttcatcaaatctaagcaacattgacttctgaaaaaatatagcactaatat |
33624645 |
T |
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| Q |
213 |
aagaaatagtacatat |
228 |
Q |
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| T |
33624644 |
aagaaatagtatatat |
33624629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 33628614 - 33628516
Alignment:
| Q |
152 |
tgaatgatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaa |
250 |
Q |
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| T |
33628614 |
tgaattatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaa |
33628516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 12059786 - 12059882
Alignment:
| Q |
85 |
ctaaaaactctcaattattaacaaacttcttaactaacttttaacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaa |
181 |
Q |
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| T |
12059786 |
ctaaaatctctcatctaataacaaacttcttaactaacctgtaacacaagtaaactcgtaacaactatgaattatggatttgatcaaatccaaacaa |
12059882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 12053055 - 12053171
Alignment:
| Q |
55 |
aatatacactcacacatgctaattaacttgctaaaaactctcaattattaacaaacttcttaactaacttttaacacaagtgaactcctaacaactatga |
154 |
Q |
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| T |
12053055 |
aatatacactcacaattactaagaaacttgctaaaatttctcaactactaacatacttcttaact----tgtaacacaagtaaactcctaacaactatga |
12053150 |
T |
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| Q |
155 |
atgataga-ttttatcaaatc |
174 |
Q |
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|| || || |||||||||||| |
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| T |
12053151 |
attatggatttttatcaaatc |
12053171 |
T |
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