View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_41 (Length: 250)
Name: NF15038_high_41
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 24907376 - 24907610
Alignment:
| Q |
1 |
tcgaatgtcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaa |
100 |
Q |
| |
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||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907376 |
tcgaatggcgttgtaattttcaaaacagttgcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaa |
24907475 |
T |
|
| Q |
101 |
acgtgggtttagctttcccgccgccaaaccaaacaggtcctttaactgttagctctttgaaacatgggtttggctctttgaaacgtgttattgctgatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907476 |
acgtgggtttagctttcccgccgccaaaccaaacaggtcctttcactgttagctctttgaaacatgggtttggctctttgaaacgtgttattgctgatca |
24907575 |
T |
|
| Q |
201 |
atgtttttatggaatgtggaaccaataagcaataa |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
24907576 |
atgtttttatggaatgtggaaccaataagcaataa |
24907610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 2212778 - 2212658
Alignment:
| Q |
16 |
attttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctt |
115 |
Q |
| |
|
|||||||||| || ||||||||||| ||| |||||||||||||||||| ||||| ||||||| ||||||||||| ||| || |||||||||| |||| |
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| T |
2212778 |
attttcaaaattgtggcaagaaatcatgttgccgtgaaagctaggaaagctagcttctcaatttccacgaaagttgcccttcgagacgtgggtttggctt |
2212679 |
T |
|
| Q |
116 |
tcccgccgccaaaccaaacag |
136 |
Q |
| |
|
|||| |||||||||||||||| |
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|
| T |
2212678 |
tcccaccgccaaaccaaacag |
2212658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 24889863 - 24889903
Alignment:
| Q |
195 |
tgatcaatgtttttatggaatgtggaaccaataagcaataa |
235 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||||| |
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| T |
24889863 |
tgatcaatttttgtatggaaagtggaaccaataagcaataa |
24889903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 11026769 - 11026889
Alignment:
| Q |
17 |
ttttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagcttt |
116 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||| ||||| |
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|
| T |
11026769 |
ttttcaaaactgcggcaagaaatcacgttgtcgtgaaagctaggaaagaaagcttctcaatttccacgaaagtcgctctttgaaacgtgggtttggcttt |
11026868 |
T |
|
| Q |
117 |
cccgccgccaaaccaaacagg |
137 |
Q |
| |
|
||| | ||||||||||||||| |
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|
| T |
11026869 |
cccactgccaaaccaaacagg |
11026889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 24403791 - 24403656
Alignment:
| Q |
3 |
gaatgtcattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaac |
102 |
Q |
| |
|
||||| |||| || |||||||||| | |||| ||||||| |||||||||||| |||||||||||| | | |||| || |||||||||||||||||| |
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|
| T |
24403791 |
gaatgacattatatttttcaaaactgcggcaaaaaatcacgttgtcgtgaaagttaggaaagcaagttacttcatttctaggaaagttgctctttgaaat |
24403692 |
T |
|
| Q |
103 |
gtgggtttagctttcccgccgccaaaccaaacaggt |
138 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||| |
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|
| T |
24403691 |
gtgggtttggctttcccaccgtcaaaccaaacaggt |
24403656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 40350454 - 40350558
Alignment:
| Q |
31 |
gcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaacc |
130 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||| ||||| || |||| || |||| |||||||||||||||||||||| |||||||| | |||||||| |
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| T |
40350454 |
gcaaaaaatcacgttgtcgtgaaagttaggaaagcgagcttctccatttctatgaaaattgctctttgaaacgtgggtttggctttcccactgccaaacc |
40350553 |
T |
|
| Q |
131 |
aaaca |
135 |
Q |
| |
|
||||| |
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|
| T |
40350554 |
aaaca |
40350558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 6217646 - 6217776
Alignment:
| Q |
9 |
cattgtaattttcaaaacagtagcaagaaatcacattgtcgtgaaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggt |
108 |
Q |
| |
|
||||||| |||||||||| | |||||||| ||| || |||||||||||||||| |||||| | ||||| |||||||||||||||| | ||| || |
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|
| T |
6217646 |
cattgtatttttcaaaactgcggcaagaaaccacgttaccgtgaaagctaggaaactaagcttcttcattttcacgaaagttgctctttaagacgatagt |
6217745 |
T |
|
| Q |
109 |
ttagctttcccgccgccaaaccaaacaggtc |
139 |
Q |
| |
|
|| ||||| || ||||||||||||| ||||| |
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|
| T |
6217746 |
ttggcttttccaccgccaaaccaaagaggtc |
6217776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 14988302 - 14988387
Alignment:
| Q |
52 |
aaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgcc-aaaccaaacag |
136 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||| |||| ||||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
14988302 |
aaagctaggaaagtaagcttttagattttcacgaaagtagctccttgaaacgtgggtttggctttcccaccgccaaaaccaaacag |
14988387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 7561317 - 7561386
Alignment:
| Q |
66 |
aagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaaca |
135 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||| | ||||| ||||||||||||||| | ||||||||||| |
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|
| T |
7561317 |
aagcttttctattttcacgaaagtagctcttttagacgtgagtttagctttcccgcggtcaaaccaaaca |
7561386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 12768670 - 12768583
Alignment:
| Q |
52 |
aaagctaggaaagcaagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaaccaaacaggtc |
139 |
Q |
| |
|
|||||||||||||||||||| || | || ||||||||||||| || || | | ||| |||||||||||||||||||||||||||| |
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|
| T |
12768670 |
aaagctaggaaagcaagcttctctacttccacgaaagttgctccttaaaccacgagttcggctttcccgccgccaaaccaaacaggtc |
12768583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 35154572 - 35154681
Alignment:
| Q |
31 |
gcaagaaatcacattgtcgtgaaagctaggaaagc--aagcttttcaatttttacgaaagttgctctttgaaacgtgggtttagctttcccgccgccaaa |
128 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| |||| | || |||| |||||| |||||||||||||||| |||| ||||| || |||||| |
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|
| T |
35154572 |
gcaagaaatcatgttgccgtgaaagctaggaaagcaaaagcatctccatttccacgaaatttgctctttgaaacgtatgtttggcttttccattgccaaa |
35154671 |
T |
|
| Q |
129 |
ccaaacaggt |
138 |
Q |
| |
|
|||||||||| |
|
|
| T |
35154672 |
ccaaacaggt |
35154681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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