View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_46 (Length: 239)
Name: NF15038_high_46
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 41814226 - 41814435
Alignment:
| Q |
18 |
agtcttggcaacatctaccactatcatccagccattaataatctgcacgcacaataaaatcgttagcggctaccaaacttctttctattatgatttataa |
117 |
Q |
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| T |
41814226 |
agtcttggcaacatctaccactatcatccagccattaataatctgcacgcacaataaaatcgttagcggctaccaaacttctttctattatgatttataa |
41814325 |
T |
|
| Q |
118 |
acccatattctttttcttcctacatgacaatcacgaagcagaaccagcgcaaagcaaaattgcattttacatgcatgaaagaaagatggatctaccttgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41814326 |
acccatattctttttcttcctacatgacaatcacgaagcagaaccagcgcaaagcaaaattgcattttacatgcatgaaagaaagatggatctaccttgc |
41814425 |
T |
|
| Q |
218 |
cattcatctc |
227 |
Q |
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|||||||||| |
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| T |
41814426 |
cattcatctc |
41814435 |
T |
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