View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_47 (Length: 234)
Name: NF15038_high_47
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 2480294 - 2480506
Alignment:
| Q |
9 |
aattatgtttgatctccttattttcaatacaattttaatcttatttttgatattatgactctagttgtattgtaggttgagcagagtgctattattggat |
108 |
Q |
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| T |
2480294 |
aattatgtttgatctccttattttcaacacaattttaatcttatttttgatattatgactctaattgtattgtaggttgagcagagtgctattattggat |
2480393 |
T |
|
| Q |
109 |
ttataggctgagaagagaattaatagggcattttctcaccacgtacgcaacaacaaaaggatagcaaccaaggttctatctagtcgtctcatgtactcaa |
208 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2480394 |
ttataggttgagaagagaattattagggcattttctcaccacgtacgcaacagcaaaaggatagcaaccaaggttctatctagtcgtctcatgtactcaa |
2480493 |
T |
|
| Q |
209 |
aagatgaatatac |
221 |
Q |
| |
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||||||||||||| |
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| T |
2480494 |
aagatgaatatac |
2480506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 27109528 - 27109316
Alignment:
| Q |
9 |
aattatgtttgatctccttattttcaatacaattttaatcttatttttgatattatgactctagttgtattgtaggttgagcagagtgctattattggat |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27109528 |
aattatgtttgatctccttattttcaacacaattttaatcttatttttgatattatgactctaattgtattgtaggttgagcagagtgctattattggat |
27109429 |
T |
|
| Q |
109 |
ttataggctgagaagagaattaatagggcattttctcaccacgtacgcaacaacaaaaggatagcaaccaaggttctatctagtcgtctcatgtactcaa |
208 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27109428 |
ttataggttgagaagagaattattagggcattttctcaccacgtacgcaacagcaaaaggatagcaaccaaggttctatctagtcgtctcatgtactcaa |
27109329 |
T |
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| Q |
209 |
aagatgaatatac |
221 |
Q |
| |
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||||||||||||| |
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| T |
27109328 |
aagatgaatatac |
27109316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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