View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_5 (Length: 449)
Name: NF15038_high_5
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 84 - 431
Target Start/End: Original strand, 34352896 - 34353248
Alignment:
| Q |
84 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
183 |
Q |
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| T |
34352896 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
34352995 |
T |
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| Q |
184 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
283 |
Q |
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| T |
34352996 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
34353095 |
T |
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| Q |
284 |
acaaaataag-----caaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgac |
378 |
Q |
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| T |
34353096 |
acaaaataagcaaaacaaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcgttgctagtttgggattcgac |
34353195 |
T |
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| Q |
379 |
agagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatac |
431 |
Q |
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| T |
34353196 |
agagacaatggaagacgaaaagatcctggtggagctgaaagagtggctgatac |
34353248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 96 - 431
Target Start/End: Original strand, 34358547 - 34358873
Alignment:
| Q |
96 |
cacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaa |
195 |
Q |
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| T |
34358547 |
cacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaa |
34358646 |
T |
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| Q |
196 |
accattggcgtttttcctatgagctgtaccatg---tcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacagacaaaataa |
292 |
Q |
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| T |
34358647 |
accattggcgtttttcctatgagttgtgccatgcaagcagcaaaaaaaatggagattcatcaccgaattgc------atgct---------acaaaataa |
34358731 |
T |
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| Q |
293 |
g-caaaacaaaacaaaaata--gtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatgg |
389 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| ||| |
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| T |
34358732 |
gaaaaaacaaaacaaaaatagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtgg |
34358831 |
T |
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| Q |
390 |
aagacgaaaagatcctggtggagctgaaagagtggttgatac |
431 |
Q |
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| T |
34358832 |
aagacgaaaagatcctggtggagctgaaacagtggctgatac |
34358873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
106 |
tacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
205 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||| | ||| || ||||| ||||||||||| | |
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| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
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| Q |
206 |
tttttcctatgagctg |
221 |
Q |
| |
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|||||||||||||||| |
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| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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